# This file created by conda-build 3.21.7
# meta.yaml template originally from:
# D:\a\1\s\recipe, last modified Wed Dec  8 17:06:40 2021
# ------------------------------------------------

package:
  name: r-polysat
  version: '1.7_6'
source:
  sha256: 0543047f227c5e3a63aa7ccf8d7002e0b37c0511783446c4a468ff0af2c25e40
  url:
    - https://cran.r-project.org/src/contrib/Archive/polysat/polysat_1.7-6.tar.gz
    - https://cran.r-project.org/src/contrib/polysat_1.7-6.tar.gz
build:
  merge_build_host: true
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40ha856d6a_0
requirements:
  build:
    - m2-bash 4.3.042 5
    - m2-coreutils 8.25 102
    - m2-filesystem 2016.04 4
    - m2-gcc-libs 5.3.0 4
    - m2-gmp 6.1.0 3
    - m2-libbz2 1.0.6 3
    - m2-libiconv 1.14 3
    - m2-libintl 0.19.7 4
    - m2-make 4.1 5
    - m2-msys2-runtime 2.5.0.17080.65c939c 3
    - m2-sed 4.2.2 3
    - m2-zip 3.0 2
    - m2w64-binutils 2.25.1 5
    - m2w64-bzip2 1.0.6 6
    - m2w64-crt-git 5.0.0.4636.2595836 2
    - m2w64-gcc 5.3.0 6
    - m2w64-gcc-ada 5.3.0 6
    - m2w64-gcc-fortran 5.3.0 6
    - m2w64-gcc-libgfortran 5.3.0 6
    - m2w64-gcc-libs 5.3.0 7
    - m2w64-gcc-libs-core 5.3.0 7
    - m2w64-gcc-objc 5.3.0 6
    - m2w64-gmp 6.1.0 2
    - m2w64-headers-git 5.0.0.4636.c0ad18a 2
    - m2w64-isl 0.16.1 2
    - m2w64-libiconv 1.14 6
    - m2w64-libmangle-git 5.0.0.4509.2e5a9a2 2
    - m2w64-libwinpthread-git 5.0.0.4634.697f757 2
    - m2w64-make 4.1.2351.a80a8b8 2
    - m2w64-mpc 1.0.3 3
    - m2w64-mpfr 3.1.4 4
    - m2w64-pkg-config 0.29.1 2
    - m2w64-toolchain 5.3.0 7
    - m2w64-toolchain_win-64 2.4.0 0
    - m2w64-tools-git 5.0.0.4592.90b8472 2
    - m2w64-windows-default-manifest 6.4 3
    - m2w64-winpthreads-git 5.0.0.4634.697f757 2
    - m2w64-zlib 1.2.8 10
    - msys2-conda-epoch 20160418 1
  host:
    - _r-mutex 1.0.1 anacondar_1
    - intel-openmp 2021.4.0 h57928b3_3556
    - libblas 3.9.0 12_win64_mkl
    - liblapack 3.9.0 12_win64_mkl
    - m2w64-bwidget 1.9.10 2
    - m2w64-bzip2 1.0.6 6
    - m2w64-expat 2.1.1 2
    - m2w64-fftw 3.3.4 6
    - m2w64-flac 1.3.1 3
    - m2w64-gcc-libgfortran 5.3.0 6
    - m2w64-gcc-libs 5.3.0 7
    - m2w64-gcc-libs-core 5.3.0 7
    - m2w64-gettext 0.19.7 2
    - m2w64-gmp 6.1.0 2
    - m2w64-gsl 2.1 2
    - m2w64-libiconv 1.14 6
    - m2w64-libjpeg-turbo 1.4.2 3
    - m2w64-libogg 1.3.2 3
    - m2w64-libpng 1.6.21 2
    - m2w64-libsndfile 1.0.26 2
    - m2w64-libtiff 4.0.6 2
    - m2w64-libvorbis 1.3.5 2
    - m2w64-libwinpthread-git 5.0.0.4634.697f757 2
    - m2w64-libxml2 2.9.3 3
    - m2w64-mpfr 3.1.4 4
    - m2w64-pcre2 10.34 0
    - m2w64-speex 1.2rc2 3
    - m2w64-speexdsp 1.2rc3 3
    - m2w64-tcl 8.6.5 3
    - m2w64-tk 8.6.5 3
    - m2w64-tktable 2.10 5
    - m2w64-wineditline 2.101 5
    - m2w64-xz 5.2.2 2
    - m2w64-zlib 1.2.8 10
    - mkl 2021.4.0 h0e2418a_729
    - msys2-conda-epoch 20160418 1
    - r-base 4.0.5 hddad469_4
    - r-rcpp 1.0.7 r40ha856d6a_0
    - tbb 2021.4.0 h2d74725_1
    - ucrt 10.0.20348.0 h57928b3_0
    - vc 14.2 hb210afc_5
    - vs2015_runtime 14.29.30037 h902a5da_5
  run:
    - m2w64-gcc-libs
    - r-base >=4.0,<4.1.0a0
    - r-rcpp
test:
  commands:
    - '"%R%" -e "library(''polysat'')"'
about:
  home: https://github.com/lvclark/polysat/wiki
  license: GPL-2.0-only
  license_family: GPL2
  license_file: D:\bld\r-polysat_1638983564552\_h_env/lib/R/share/licenses/GPL-2
  summary: A collection of tools to handle microsatellite data of any ploidy (and
    samples of mixed ploidy) where allele copy number is not known in partially heterozygous
    genotypes.  It can import and export data in ABI 'GeneMapper', 'Structure', 'ATetra',
    'Tetrasat'/'Tetra', 'GenoDive', 'SPAGeDi', 'POPDIST', 'STRand', and binary presence/absence
    formats.  It can calculate pairwise distances between individuals using a stepwise
    mutation model or infinite alleles model, with or without taking ploidies and
    allele frequencies into account.  These distances can be used for the calculation
    of clonal diversity statistics or used for further analysis in R.  Allelic diversity
    statistics and Polymorphic Information Content are also available.  polysat can  assist
    the user in estimating the ploidy of samples, and it can estimate allele  frequencies
    in populations, calculate pairwise or global differentiation statistics  based
    on those frequencies, and export allele frequencies to 'SPAGeDi' and 'adegenet'.   Functions
    are also included for assigning alleles to isoloci in cases where one pair  of
    microsatellite primers amplifies alleles from two or more independently segregating
    isoloci.  polysat is described by Clark and Jasieniuk (2011) <doi:10.1111/j.1755-0998.2011.02985.x>
    and Clark and Schreier (2017) <doi:10.1111/1755-0998.12639>.
extra:
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - conda-forge/r
