R: Multiplicative Scatter Correction

msc {pls} | R Documentation

## Multiplicative Scatter Correction

### Description

Performs multiplicative scatter/signal correction on a data matrix.

### Usage

    msc(X, reference = NULL)
    ## S3 method for class 'msc'
    predict(object, newdata, ...)
    ## S3 method for class 'msc'
    makepredictcall(var, call)

### Arguments

`X, newdata` | numeric matrices. The data to scatter correct.
`reference` | numeric vector. Spectre to use as reference. If `NULL`, the column means of `X` are used.
`object` | an object inheriting from class `"msc"`, normally the result of a call to `msc` with a single matrix argument.
`var` | A variable.
`call` | The term in the formula, as a call.
`...` | other arguments. Currently ignored.

### Details

`makepredictcall.msc` is an internal utility function; it is not meant for interactive use. See `makepredictcall` for details.

### Value

Both `msc` and `predict.msc` return a multiplicative scatter corrected matrix, with attribute `"reference"` the vector used as reference spectre. The matrix is given class `c("msc", "matrix")`. For `predict.msc`, the `"reference"` attribute of `object` is used as reference spectre.

### Author(s)

Bjørn-Helge Mevik and Ron Wehrens

### References

Martens, H., Næs, T. (1989) Multivariate calibration. Chichester: Wiley.

### See Also

`mvr`, `pcr`, `plsr`, `stdize`

### Examples

    data(yarn)
    ## Direct correction:
    Ztrain <- msc(yarn$NIR[yarn$train,])
    Ztest <- predict(Ztrain, yarn$NIR[!yarn$train,])

    ## Used in formula:
    mod <- plsr(density ~ msc(NIR), ncomp = 6, data = yarn[yarn$train,])
    pred <- predict(mod, newdata = yarn[!yarn$train,]) # Automatically scatter corrected

[Package pls version 2.6-0 Index]