R: Combines SRST2 and Blast results into a single dataframe

combine_results {Plasmidprofiler} | R Documentation

## Combines SRST2 and Blast results into a single dataframe

### Description

Combines blast and SRST2 results, cuts to desired columns (Sample, Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches plasmids to BR and appends simplified INC names, all future modifications are done to this dataframe

### Usage

    combine_results(sr, br)

### Arguments

`sr` | SRST2 results loaded from read_srst2
`br` | Blast results parsed by blast_parser

### Value

Seven column dataframe of SRST2 results now including INC groups

### Examples

    ## Not run:
    combine_results(example_srst2_results, example_blast_results)

    ## End(Not run)

[Package Plasmidprofiler version 0.1.6 Index]