R: Identify Antimicrobial Resistance Positive Plasmids from...

amr_positives {Plasmidprofiler} | R Documentation

## Identify Antimicrobial Resistance Positive Plasmids from Blast Results

### Description

This function loads the imported blast results, identifies which plasmids carry AMR genes at highest identity. May have issues with multiple genes per plasmid, currently optimized for identifying one of two genes

### Usage

    amr_positives(blast.results)

### Arguments

`blast.results` | Blast results loaded from read_blast or from Global Env

### Value

Two column DF of plasmid names and genes present

### Examples

    ## Not run:
    amr_positives(blastdata)

    ## End(Not run)

[Package Plasmidprofiler version 0.1.6 Index]