R: Methods for class 'phyloglm'.

phyloglm-methods {phylolm} | R Documentation

## Methods for class 'phyloglm'.

### Description

These are method functions for class 'phyloglm'.

### Usage

    ## S3 method for class 'phyloglm'
    print(x, digits = max(3, getOption("digits") - 3), ...)
    ## S3 method for class 'phyloglm'
    summary(object, ...)
    ## S3 method for class 'phyloglm'
    residuals(object,type = c("response"), ...)
    ## S3 method for class 'phyloglm'
    vcov(object, ...)
    ## S3 method for class 'phyloglm'
    logLik(object, ...)
    ## S3 method for class 'phyloglm'
    AIC(object, k=2, ...)
    ## S3 method for class 'phyloglm'
    plot(x, ...)

### Arguments

`x` | an object of class `"phyloglm"`.
`object` | an object of class `"phyloglm"`.
`digits` | number of digits to show in summary method.
`type` | Currently, only the "response" type is implemented. It returns the raw residuals, that is, the differences between the observed responses and the predicted values. They are phylogenetically correlated.
`k` | numeric, the penalty per parameter to be used; the default `k = 2` is the classical AIC.
`...` | further arguments to methods.

### Author(s)

Lam Si Tung Ho

### See Also

`phyloglm`

[Package phylolm version 2.6.2 Index]