R: Binary population tree within Arabidopsis thaliana

guidetree {phylolm} | R Documentation

## Binary population tree within Arabidopsis thaliana

### Description

Binary population tree for 29 A. thaliana accessions and A. lyrata, obtained from chromosome 4 using MDL to delimit loci, BUCKy to estimate quartet concordance factors (CFs) and Quartet Max Cut to estimate the tree topology.

### Usage

    data(guidetree)

### Format

tree object of class phylo. Branch lengths are in coalescent units.

### References

Stenz, Noah W. M., Bret Larget, David A. Baum and Cécile Ané (2015). Exploring tree-like and non-tree-like patterns using genome sequences: An example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Systematic Biology, 64(5):809-823.

TICR pipeline: github.com/nstenz/TICR

[Package phylolm version 2.6.2 Index]