R: Extraction of simulated traits

extract.simul_process {PhylogeneticEM} | R Documentation

## Extraction of simulated traits

### Description

`extract.simul_process` takes an object of class "`simul_process`", result of function `simul_process`, and extracts the traits values, expectations or optimal values at the tips or the internal nodes.

### Usage

    ## S3 method for class 'simul_process'
    extract(x, where = c("tips", "nodes"),
      what = c("states", "expectations", "optimal.values"), ...)

### Arguments

`x` | an object of class "`simul_process`", result of function `simul_process`.
`where` | one of "tips" (the default) or "nodes". Where to extract the results.
`what` | one of "states" (the default), "expectation", or "optimal.values".
`...` | unused

### Details

##

### Value

A matrix giving the selected quantities at the selected nodes or tips. If the tips or nods are labeled, then the colnames of the matrix are set accordingly.

### See Also

`simul_process`

[Package PhylogeneticEM version 1.1.0 Index]