R: Parameter estimates

params_process.PhyloEM {PhylogeneticEM} | R Documentation

## Parameter estimates

### Description

`params` takes an object of class `PhyloEM`, and returns the inferred parameters of the process.

### Usage

    ## S3 method for class 'PhyloEM'
    params_process(x, method.selection = NULL, K = NULL,
      alpha = NULL, rBM = FALSE, init = FALSE, ...)

### Arguments

`x` | an object of class `PhyloEM`
`method.selection` | (optional) the method selection to be used. One of "LINselect", "DDSE", "Djump". Default to "LINselect".
`K` | (optional) an integer giving the number of shifts for which to retrieve the parameters. Default to NULL (automatically selected number of shifts, see `method.selection` argument).
`alpha` | (optional) a value of alpha for which to retrieve the parameters. Can be an (un-ambiguous) estimation of the true value. If specified, then `K` must be precised too. Default to NULL (automatically selected value, see `method.selection` argument).
`rBM` | (optional) if TRUE, and if the process is "scOU", returns the raw parameters of the BM on the re-scaled tree. Default to FALSE.
`init` | (optional) if TRUE, gives the parameters from the initialization of the EM. Default to FALSE. This has no effect if `K` is not specified.
`...` | unused.

### Value

An object of class `params_process`.

### See Also

`PhyloEM`, `imputed_traits.PhyloEM`

[Package PhylogeneticEM version 1.1.0 Index]