R: Segmentation in the BM case

segmentation.BM {PhylogeneticEM} | R Documentation

## Segmentation in the BM case

### Description

`segmentation.BM` performs the segmentation algorithm described.

### Usage

    segmentation.BM(nbr_of_shifts, costs0, diff_exp)

### Arguments

`nbr_of_shifts` | Number of shifts on the phylogeny allowed
`costs0` | Cost of each edge
`diff_exp` | Difference of expectations

### Details

This function takes the largest values of costs0, and make them null, thanks to delta and tau.

### Value

List containing : edges_max : array of nbr_of_shifts edges where costs0 is maximal. shifts:list containing the computed tau and delta

[Package PhylogeneticEM version 1.1.0 Index]