R: Residuals

compute_residuals.simple {PhylogeneticEM} | R Documentation

## Residuals

### Description

`compute_residuals.simple` computes the residuals after the fit of the data in the simple case where the inverse of the variance matrix is given.

### Usage

    compute_residuals.simple(phylo, Y_data_vec, sim, Sigma_YY_chol_inv, miss)

### Arguments

`phylo` | Input tree.
`sim` | (list) : result of function `simulate`.
`Y_data` | : vector indicating the data at the tips.
`Sigma_YY_inv` | : invert of the variance-covariance matrix of the data.

### Details

This function takes parameters sim and Sigma_YY_inv from `compute_mean_variance.simple`. It uses function `extract_simulate_internal` to extract the needed quantities from these objects.

[Package PhylogeneticEM version 1.1.0 Index]