R: Matrix of tree-induced correlations for the scOU

compute_tree_correlations_matrix.scOU {PhylogeneticEM} | R Documentation

## Matrix of tree-induced correlations for the scOU

### Description

`compute_tree_correlations_matrix.scOU` computes the (n+m)x(m+n) matrix of correlations induced by the tree. It takes two cases in consideration: root fixed, or root in stationary state.

### Usage

    compute_tree_correlations_matrix.scOU(times_shared, distances_phylo, params_old,
      ...)

### Arguments

`times_shared` | times of shared ancestry of all nodes and tips, result of function `compute_times_ca`
`distances_phylo` | (matrix) : phylogenetic distance, result of function `compute_dist_phy`
`params_old` | (list) : old parameters to be used in the E step

### Value

matrix of variance covariance for the scOU

[Package PhylogeneticEM version 1.1.0 Index]