R: Complete variance covariance matrix for scOU

compute_variance_covariance.scOU {PhylogeneticEM} | R Documentation

## Complete variance covariance matrix for scOU

### Description

`compute_variance_covariance.scOU` computes the (n+m)*p squared variance covariance matrix of vec(X).

### Usage

    compute_variance_covariance.scOU(times_shared, distances_phylo, params_old, ...)

### Arguments

`times_shared` | times of shared ancestry of all nodes and tips, result of function `compute_times_ca`
`distances_phylo` | (matrix) : phylogenetic distance, result of function `compute_dist_phy`
`params_old` | (list) : old parameters to be used in the E step

### Value

matrix of variance covariance for the scOU

[Package PhylogeneticEM version 1.1.0 Index]