R: Clustering associated to a shift allocation, assuming no...

clusters_from_shifts {PhylogeneticEM} | R Documentation

## Clustering associated to a shift allocation, assuming no homoplasy.

### Description

`clusters_from_shifts` take a vector of shifts edges, and gives the clustering of the tips induced by them, in a "no homoplasy" model (i.e. no convergence is allowed).

### Usage

    clusters_from_shifts(tree, edges,
      part.list = enumerate_tips_under_edges(tree))

### Arguments

`tree` | phylogenetic tree
`edges` | a vector of edges of the tree, where the shifts are
`part.list` | a list giving the descendant tips of each edge

### Details

By default, this function uses `enumerate_tips_under_edges` to compute the list of tips under each edge.

### Value

list of size n+m-1, entry i is the vector of tips bellow edge i.

[Package PhylogeneticEM version 1.1.0 Index]