R: Phylogenetic Distances

compute_dist_phy {PhylogeneticEM} | R Documentation

## Phylogenetic Distances

### Description

`compute_dist_phy` computes the phylogenetic distances d_ij between all the tips i, j.

### Usage

    compute_dist_phy(phy)

### Arguments

`phy` | a phylogenetic tree of class `phylo`.

### Details

Tis function relies on `ape` function `dist.nodes`.

### Value

a matrix of phylogenetic distances, ordered as the tips of the tree. The matrix is of type `symmetricMatrix-class`.

[Package PhylogeneticEM version 1.1.0 Index]