R: Simmap format mapping from list of edges

shifts_to_simmap {PhylogeneticEM} | R Documentation

## Simmap format mapping from list of edges

### Description

`shifts_to_simmap` takes a vector of edges where the shifts occur, and return a simmap formated tree, mapped with corresponding regimes.

### Usage

    shifts_to_simmap(tree, shifts_edges)

### Arguments

`tree` | input tree in `phylo` format
`shifts_edges` | shifts positions on the edges

### Details

Ancestral state is always 0, and other states are consecutive integers.

### Value

tree a simmap object

[Package PhylogeneticEM version 1.1.0 Index]