R: Parameter estimates

params_process.PhyloEM {PhylogeneticEM}

R Documentation

Parameter estimates

params takes an object of class PhyloEM, and returns the inferred parameters of the process.

## S3 method for class 'PhyloEM'
params_process(x, method.selection = NULL, K = NULL,
  alpha = NULL, rBM = FALSE, init = FALSE, ...)

`x`	an object of class `PhyloEM`
`method.selection`	(optional) the method selection to be used. One of "LINselect", "DDSE", "Djump". Default to "LINselect".
`K`	(optional) an integer giving the number of shifts for which to retrieve the parameters. Default to NULL (automatically selected number of shifts, see `method.selection` argument).
`alpha`	(optional) a value of alpha for which to retrieve the parameters. Can be an (un-ambiguous) estimation of the true value. If specified, then `K` must be precised too. Default to NULL (automatically selected value, see `method.selection` argument).
`rBM`	(optional) if TRUE, and if the process is "scOU", returns the raw parameters of the BM on the re-scaled tree. Default to FALSE.
`init`	(optional) if TRUE, gives the parameters from the initialization of the EM. Default to FALSE. This has no effect if `K` is not specified.
`...`	unused.

An object of class params_process.