| init.simulate.OU {PhylogeneticEM} | R Documentation |
Function used in simulate for OU initialization.
init.simulate.OU(phy, p, root.state, optimal.value, simulate_random, ...)
root.state |
(list): state of the root, with: random : random state (TRUE) or deterministic state (FALSE) value.root : if deterministic, value of the character at the root exp.root : if random, expectation of the character at the root var.root : if random, variance of the character at the root (pxp matrix) |
phy: |
Input tree. |
p: |
dimension of the trait simulated |
paramSimu: array p x nNodes x 3, filled with NAs. Slice paramSimu[, ntaxa + 1, ] (array p x 3) is initialized with simulated states, root expectations, and optimal values for all the traits.