| compute_actualization_matrix_ultrametric {PhylogeneticEM} | R Documentation |
compute_actualization_matrix_ultrametric computes a squares p*nedges bloc diagonal
matrix of the (I_p - exp(-A * (h - t_pa(j))))_j node.
compute_actualization_matrix_ultrametric(tree, selection.strength, times_shared = compute_times_ca(tree))
tree |
a phylogenetic tree. |
selection.strength |
the selection strength of the process. |
times_shared |
a matrix, result of function |
Careful: the root is not taken into account in this function.
Matrix of size p*nedges