Phyloclustering -- Phylogenetic Clustering.

Announcement of phyclust

Instead of the irregular maintenance for the vignette, phyclust-guide.pdf, we may only update more examples and the newest documents on our website. Please check Phylogenetic Clustering at https://snoweye.github.io/phyclust/ . Some documents for main functions in the ../Documents/ subdirectory are provided for references and information for outsourced programs `ms`, `seq-gen`, `baseml` of `PAML`, and `Hap-Clustering`. Here are the descriptions for each file.

Readme File | Description
--- | ---
00_Readme-phyclust-c.txt | A text file for the library `phylust-c`, a kernel of this package, and basically it is in the format of DESCRIPTION file in R and records the version. Only the stable version of C library would be used to build the package.
00_Readme-ms.txt | A text file for `ms` indicates the version and documentations.
00_Readme-seq-gen.txt | A text file for `seq-gen` indicates the version and documentations.
00_Readme-paml_baseml.txt | A text file for `paml.baseml` indicates the version and documentations.
License | Description
ms-Readme.txt | A text file, the original readme file in `ms`.
seq-gen-Readme.txt | A text file, the original readme file in `seq-gen`.
paml_baseml-Readme.txt | A text file, the original readme file in `PAML`.
tzeng-Readme.txt | A text file, the original readme file in `Hap-Clustering`.
Document | Description
phyclust-guide.pdf | A user guide (vignette) for `phyclust`. Click here to read.
phyclust-help.pdf | A help pages (manual) for `phyclust`. Click here to read.
msdoc.pdf | An online PDF file, the original document for `ms`. Click here to read.
Seq-Gen.v.1.3.2/ | A online directory contains the original document for `seq-gen`, and it is in HTML format. Click here to read.
pamlDOC.pdf | An online PDF file, the original document for `PAML`. Click here to read.

Maintain: Wei-Chen Chen E-Mail: wccsnow@gmail.com | Best Resolution Firefox 3.5 1024x768