R: Functions for Printing or Summarizing Objects According to...

print.object {phyclust} | R Documentation

## Functions for Printing or Summarizing Objects According to Classes

### Description

Several classes are declared in phyclust, and these are functions to print and summary objects.

### Usage

    ## S3 method for class 'baseml'
    print(x, ...)
    ## S3 method for class 'ms'
    print(x, ...)
    ## S3 method for class 'phyclust'
    print(x, digits = max(4, getOption("digits") - 3), ...)
    ## S3 method for class 'Pt'
    print(x, ...)
    ## S3 method for class 'RRand'
    print(x, digits = max(4, getOption("digits") - 3), ...)
    ## S3 method for class 'seq.data'
    print(x, ...)
    ## S3 method for class 'seqgen'
    print(x, ...)
    ## S3 method for class 'phyclust'
    summary(object, ...)

### Arguments

`x` | an object with the class attributes.
`digits` | for printing out numbers.
`object` | an object with the class attributes.
`...` | other possible options.

### Details

These are useful functions for summarizing and debugging.

For `ms`, `seqgen`, and `paml.baseml`, it will show the result as standalone versions on the STDOUT out with line by line.

For other functions, they only show summaries of objects. Use `names` or `str` to explore the details.

### Value

The results will cat or print on the STDOUT by default.

### Author(s)

Wei-Chen Chen wccsnow@gmail.com

### References

Phylogenetic Clustering Website: https://snoweye.github.io/phyclust/

### See Also

`ms`, `paml.baseml`, `phyclust`, `phyclust.Pt`, `RRand`, `seqgen`.

### Examples

    ## Not run:
    library(phyclust, quiet = TRUE)

    # Functions applied by directly type the names of objects.

    ## End(Not run)

[Package phyclust version 0.1-30 Index]