689940f413fed72cc4824cd5843f61af *CITATION
2a4ea35908ad4f97fcc95b909bc683e0 *DESCRIPTION
a1ba0771a5ce1fca9cadf52821206433 *Documents/00_Readme-ms.txt
0120eb67d5ab5b08389903dc2252dd0d *Documents/00_Readme-paml_baseml.txt
094ccf90567e6ca49e6f66c70be43dd9 *Documents/00_Readme-phyclust-c.txt
0a970ca3c4219afc82e349a2d68e1e33 *Documents/00_Readme-seq-gen.txt
d24f9ca57466547afd5cfd55e95690b0 *Documents/ms-Readme.txt
4ffde64566565c5b2363607782b34552 *Documents/paml_baseml-Readme.txt
bd479c9845f4eab8fcf2046b56eaf20e *Documents/seq-gen-Readme.txt
9e4e6372f1ec441ae155a5f5d84969c7 *Documents/tzeng-Readme.txt
f063bc08f74e79467e7a84bfcd7c8fe0 *INDEX
3ec0bbe4dab94bf9479e8e312a1e9f8c *Meta/Rd.rds
eb99a65b4a0268920584c935e0198262 *Meta/data.rds
d310e5ade30f74a2d5219bdead38d77e *Meta/demo.rds
145bf2c78f999791e0c372db36ed6d7a *Meta/features.rds
38a285828952cdce55341904c68094f0 *Meta/hsearch.rds
65bd60b643bd7be5a72352a5ea67ff78 *Meta/links.rds
ba1d5dad7d5b56508b522859ef43e6cf *Meta/nsInfo.rds
a7fb86d0661b1922141ef202813c7252 *Meta/package.rds
7433cd578f78bd237fdb932e7c75e95f *Meta/vignette.rds
1b58af01ee17e7a7eccc7ddd6030f036 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/phyclust
d49d339f277460c8d9300dc706481c74 *R/phyclust.rdb
725a67f8cb44465e5fb29fa9781223b6 *R/phyclust.rdx
8001faa2af3eb5a4bcb06e55c51aa577 *data/Rdata.rdb
805afeead197144ba27d1848af20dc1e *data/Rdata.rds
2d9b8e94513e69865bdcd751f3b60d4d *data/Rdata.rdx
0d42f3f8a6d00732ba26bbbd78761b80 *data/crohn.phy
ee4a4ed3a217e0b34960fe38cfac626d *data/pony524.phy
e27cf87aa1e00c4d62e44ee9c56007ea *data/pony625.fas
393bafafe308c1e10321810a344d4ae2 *demo/em_step.r
e6611e6a833caa21562ae9b39920ac3c *demo/ex_trees.r
0f9b1154f513176a1ca1b5162e1e28a5 *demo/pony_524.r
ddf12ccfc941791a58d7d5087297cb98 *demo/simu_ms.r
cf0aaacddadb7c2703ba1aee5fa9b586 *demo/simu_ms_tbs.r
f728719d0adfcdfae4d6cc1e03a83cf8 *demo/simu_seqgen_anc.r
f1c3e44357578937ef2e276cfccae2ec *demo/simu_seqgen_anc_SNP.r
d79df6e96dcdf36428496f55cb48f2de *demo/toy.r
fe7a7c673772d8f8b4ad6ae965e4ee23 *demo/toy_missing.r
a02698b7b5c82e35da50e59a1e91bcc0 *demo/toy_paml_baseml.r
a62b81440793984287bb5cdbeac5de3d *demo/tzeng2005.r
f9e2435a3b6d587f7809add5720ea21c *doc/index.html
fa1fb8fe23fca005343671d170662241 *doc/index_doc.html
2553cde7df251e20d45ba96c1186d648 *doc/phyclust-guide.Rnw
528af2d2a244262a13aa5f42ffb721f7 *doc/phyclust-guide.pdf
f3dfddfcfc4fbae4d749a1b78757e936 *help/AnIndex
340e1c2893640450f095ba8d8fbfb5d9 *help/aliases.rds
74835f095f0eed9a2ed5ef59a9d37f80 *help/paths.rds
f106d2b2ad297dc7d828bce7fe253823 *help/phyclust.rdb
392398d12df4eccd5ac4255fdb5eb26d *help/phyclust.rdx
3b0d2f3c2e6f4acc513c240035c1cf49 *html/00Index.html
712b6cab18b24f0197006b74b2a05058 *html/00_phyclust-package.html
833adf2014803719b0ec1a450f44bbb9 *html/11_d.Color.html
427b1c75eda6b43541c96f6f8a7a483f *html/11_d.EMC.html
8c29297c8078b54aee9b0869c2ab2936 *html/11_d.EMControl.html
8acbf388f993832652b5d4892957556c *html/11_d.boundary.method.html
6abb702a67be874f1a0ab89ec79fd522 *html/11_d.code.type.html
86ef4478e2bd651e0919d5c0bd19371e *html/11_d.edist.model.html
8fcd8072e45818f3bb26e72de6578526 *html/11_d.em.method.html
a92e0243a6147e38dcce7c74b6c5c402 *html/11_d.identifier.html
fb83fdf9f8ff12dff8af1a1065603542 *html/11_d.init.method.html
fce1fb7a0dda29c35e33b61ec6bd5963 *html/11_d.init.procedure.html
121364957024cddf02c15c37a2965363 *html/11_d.label.method.html
26c56ca02f660c4bfdda782c79c6eaa1 *html/11_d.se.model.html
825161d873ac5db3fe6a0ed6ffde6535 *html/11_d.show.option.html
afe2b45752231880d4bf6ea7010b1942 *html/11_d.standard.code.html
94591c954de01d57463821f2f2e35eac *html/11_d.substitution.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6576dbeb0cbc1ba3c68dd69b53fae830 *html/RRand.html
e1ab4b1b1bcd03deee7f194686645aab *html/as.star.tree.html
d6845fe2f46df33b52153332cef7507c *html/bootstrap.seq.data.html
0916eb90196dc7175110441752b189d8 *html/bootstrap.seq.html
e114ccd56ea248305a92ad5bf49f5362 *html/bootstrap.star.trees.html
f8c63cff744b384f9521f94182b1e36b *html/bootstrap.star.trees.seq.html
689b8eadd66bd34cb498e332b6b6d02e *html/code2nid.html
66c4ebd7a58bfc401996de59490b24cc *html/code2snp.html
b3b22e642706d96958c995e4086ef281 *html/data.fasta.pony.html
8b11d97f5001d489fa4e474d10ef5104 *html/data.phylip.crohn.html
1efcb79b76d26c9ec8ce21472b84893a *html/data.phylip.pony.html
bc7c372d1a89408b44ac07ac85478322 *html/file.read.html
a30be33ff538cbeefec76e14a738c899 *html/file.write.html
a71d7245bc673487980905486abc5bed *html/find.best.html
3ec77390b4e6d454b928a56d2c7ff569 *html/find.consensus.html
1d489eab828ad2865634ee4a6b04d3c4 *html/gen.equal.star.anc.dec.html
724e6b3b309bffd2ab377b9ddfdee37e *html/gen.seq.html
194d6cbc0225917d937b5df024f5fc07 *html/gen.star.tree.html
be937d1040bc1d18ca56e6867a3dee8d *html/gen.unit.K.html
7027b3b031c1677ac9065d4189a9af4c *html/get.rooted.tree.height.html
304986fd7157592301fc737ba3ea05b2 *html/getcut.fun.html
396c538d13f047af19b7dc2f9f5378d7 *html/haplo.post.prob.html
de76341702471a82f722fb3f32224daf *html/ms.html
2f4c0ace938a12b73a3d26aa6eb2b870 *html/nid.aid.cid.html
73cb42eda428fb9169b5e6be2d93c86c *html/paml.baseml.html
7b5f1d020498e0951230fde41cc480a6 *html/phyclust.Pt.html
49ba3a25695e17dcab966c3dd980e716 *html/phyclust.e.step.html
ec2b6ec31c211f7196f1dbdb3f3001ed *html/phyclust.edist.html
d3711ee76f4b3de15815d146bd7af537 *html/phyclust.em.step.html
3a845cdf1ea40814e931e014ea63fdf2 *html/phyclust.html
6fa54adccf6bfba87ede5620d5ea8176 *html/phyclust.logL.html
0926726467f301e9dd2ca37a1335ce4b *html/phyclust.m.step.html
5e0cd938ac4ccdb548c497697a75c851 *html/phyclust.se.html
1e36742a5b7703b1791e43d79ddcdf07 *html/phyclust.se.update.html
804c2d0c8a76aeaf1502e87ecffff542 *html/phyclust.update.html
d62b56acc1b7c51ae1f22b048b150f91 *html/plotdots.html
1c7d90b635208816dfca844fa197d532 *html/plotgaps.html
f76e4e82985ec5ffcfab62b77056cc72 *html/plothist.html
cda05cd3bc9be3e9307c31bb017f1153 *html/plotnj.html
b228c5f37d710b21e5aecc159c501be4 *html/plotstruct.html
5ea965b8965a39698e0d15e2f3a3afa6 *html/print.summary.html
6dbd0649d7214de5bdc3344efde21d1f *html/prune.Mu.html
085b7cecd73f7a57412ce363fb23b10d *html/read.seqgen.html
70958a7fd6761a1f5f0723af49198b0b *html/rescale.rooted.tree.html
cd98ce8271bc6fbb33d08e0eb1760b12 *html/seq.data.html
4a07a76ea96d430a0c737f4c4daac087 *html/seqgen.html
974496ccccc5cb2233d397ffbf825f9f *html/snp2sid.html
ce5c684dd6c462128c7260493436507e *html/zz_all.internal.html
6d5703ce750a769e36a857f805a350f3 *html/zz_all.internal.tzeng.html
f0af1946dbb0aa23fbac1d58e46f18ac *libs/x64/phyclust.dll
ccf21e60059d607b31945e33e6ce209d *test/test.r
