R: Transfer SNP codes (1, 2, -) and sids (0, 1, 2)

snp2sid {phyclust} | R Documentation

## Transfer SNP codes (1, 2, -) and sids (0, 1, 2)

### Description

Transfer SNP codes (1, 2, -) and SNP ids (0, 1, 2).

### Usage

    snp2sid(snpseq)
    sid2snp(sidseq)

### Arguments

`snpseq` | a character vector contains SNP codes, 1, 2, or -.
`sidseq` | a numerical vector contains SNP ids, 0, 1, or 2.

### Details

This function is based on the internal object `.snp` to transfer SNP codes and SNP ids.

### Value

`snp2sid` returns a numerical vector containing SNP ids, and `sid2snp` returns a character vector containing SNP codes.

### Author(s)

Wei-Chen Chen wccsnow@gmail.com

### References

Phylogenetic Clustering Website: https://snoweye.github.io/phyclust/

### See Also

`.show.option`, `.snp`, `code2nid`, `nid2code`, `code2snp`, `snp2code`.

### Examples

    ## Not run:
    library(phyclust, quiet = TRUE)

    a <- c("1", "2", "1", "-", "2")
    snp2sid(a)
    sid2snp(snp2sid(a))

    ## End(Not run)

[Package phyclust version 0.1-30 Index]