R: Lento plot

lento {phangorn} | R Documentation

## Lento plot

### Description

The lento plot represents support and conflict of splits/bipartitions.

### Usage

    lento(obj, xlim = NULL, ylim = NULL, main = "Lento plot", sub = NULL,
      xlab = NULL, ylab = NULL, bipart = TRUE, trivial = FALSE,
      col = rgb(0, 0, 0, 0.5), ...)

### Arguments

`obj` | an object of class phylo, multiPhylo or splits
`xlim` | graphical parameter
`ylim` | graphical parameter
`main` | graphical parameter
`sub` | graphical parameter
`xlab` | graphical parameter
`ylab` | graphical parameter
`bipart` | plot bipartition information.
`trivial` | logical, whether to present trivial splits (default is FALSE).
`col` | color for the splits / bipartition.
`...` | Further arguments passed to or from other methods.

### Value

lento returns a plot.

### Author(s)

Klaus Schliep klaus.schliep@gmail.com

### References

Lento, G.M., Hickson, R.E., Chambers G.K., and Penny, D. (1995) Use of spectral analysis to test hypotheses on the origin of pinninpeds. Molecular Biology and Evolution, 12, 28-52.

### See Also

`as.splits, hadamard`

### Examples

    data(yeast)
    yeast.ry <- acgt2ry(yeast)
    splits.h <- h2st(yeast.ry)
    lento(splits.h, trivial=TRUE)

[Package phangorn version 2.6.2 Index]