R: Utility function to plot.phylo

cladePar {phangorn} | R Documentation

## Utility function to plot.phylo

### Description

cladePar can help you coloring (choosing edge width/type) of clades.

### Usage

    cladePar(tree, node, edge.color = "red", tip.color = edge.color,
      edge.width = 1, edge.lty = 1, x = NULL, plot = FALSE, ...)

### Arguments

`tree` | an object of class phylo.
`node` | the node which is the common ancestor of the clade.
`edge.color` | see plot.phylo.
`tip.color` | see plot.phylo.
`edge.width` | see plot.phylo.
`edge.lty` | see plot.phylo.
`x` | the result of a previous call to cladeInfo.
`plot` | logical, if TRUE the tree is plotted.
`...` | Further arguments passed to or from other methods.

### Value

A list containing the information about the edges and tips.

### Author(s)

Klaus Schliep klaus.schliep@gmail.com

### See Also

`plot.phylo`

### Examples

    tree <- rtree(10)
    plot(tree)
    nodelabels()
    x <- cladePar(tree, 12)
    cladePar(tree, 18, "blue", "blue", x=x, plot=TRUE)

[Package phangorn version 2.6.2 Index]