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R/library/phangorn/html/dist.p.html
R/library/phangorn/html/cophenetic.networx.html
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R/library/phangorn/html/consensusNet.html
R/library/phangorn/html/superTree.html
R/library/phangorn/html/upgma.html
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R/library/phangorn/html/lento.html
R/library/phangorn/html/phyDat.html
R/library/phangorn/html/identify.networx.html
R/library/phangorn/R/sysdata.rdb
R/library/phangorn/extdata/trees/RAxML_bestTree.AIs
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R/library/phangorn/Meta/Rd.rds
R/library/phangorn/html/as.splits.html
R/library/phangorn/html/treedist.html
R/library/phangorn/Meta/vignette.rds
R/library/phangorn/html/getClans.html
R/library/phangorn/extdata/trees/RAxML_bipartitions.mtG
R/library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.AIs
R/library/phangorn/html/simSeq.html
R/library/phangorn/extdata/HIVb.dat
R/library/phangorn/html/pml.html
R/library/phangorn/html/read.aa.html
R/library/phangorn/extdata/FLU.dat
R/library/phangorn/MD5
R/library/phangorn/extdata/trees/RAxML_bootstrap.3moles
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R/library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.mtG
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R/library/phangorn/html/coalSpeciesTree.html
R/library/phangorn/NAMESPACE
R/library/phangorn/html/R.css
R/library/phangorn/html/00Index.html
R/library/phangorn/extdata/RtREV.dat
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R/library/phangorn/html/addConfidences.html
R/library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.YCh
R/library/phangorn/html/yeast.html
R/library/phangorn/NEWS
R/library/phangorn/html/splitsNetwork.html
R/library/phangorn/html/NJ.html
R/library/phangorn/doc/index.html
R/library/phangorn/extdata/mtmam.dat
R/library/phangorn/extdata/Dayhoff.dat
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R/library/phangorn/html/SOWH.test.html
R/library/phangorn/extdata/trees/Splits.txt
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R/library/phangorn/html/pmlPart.html
R/library/phangorn/extdata/trees/woodmouse.fasta
R/library/phangorn/html/CI.html
R/library/phangorn/Meta/hsearch.rds
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R/library/phangorn/html/hadamard.html
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R/library/phangorn/extdata/trees/RAxML_bestTree.Wang.out
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R/library/phangorn/extdata/lg.dat
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R/library/phangorn/libs/x64/phangorn.dll
R/library/phangorn/html/pml.fit.html
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R/library/phangorn/extdata/trees/RAxML_bestTree.3moles
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R/library/phangorn/html/dfactorial.html
R/library/phangorn/html/phangorn-internal.html
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R/library/phangorn/html/chloroplast.html
R/library/phangorn/data/yeast.RData
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R/library/phangorn/html/pmlMix.html
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R/library/phangorn/html/phangorn-package.html
R/library/phangorn/html/Ancestors.html
R/library/phangorn/html/writeDist.html
R/library/phangorn/extdata/trees/RAxML_bootstrap.YCh
R/library/phangorn/html/maxCladeCred.html
R/library/phangorn/extdata/jtt-dcmut.dat
R/library/phangorn/html/SH.test.html
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R/library/phangorn/html/cladePar.html
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R/library/phangorn/html/densiTree.html
R/library/phangorn/doc/Trees.Rnw
R/library/phangorn/extdata/trees/primates.dna
