82c44d6919bfb89935a2aaf44893f750 *CITATION
da0f384cbf73aab129bae31a17078734 *DESCRIPTION
fe886f37a2af35fe8d332d60463c5f62 *INDEX
60e88de86b6d7537d210f34b250a93d6 *Meta/Rd.rds
9848a30803127636eacb9e3ffa572275 *Meta/data.rds
cedcbc3bba15cebd603c799a06f1979e *Meta/hsearch.rds
d4d2e69461549cfe9adf762604aada85 *Meta/links.rds
7f354f70ea418147d18fe7849bb54556 *Meta/nsInfo.rds
8ba71c8058ff872366b0b3a0b793d89e *Meta/package.rds
3363456f3e1222f04c57f94a704ff486 *Meta/vignette.rds
9bee3fcf1edbd1a1f51b821f4fd19798 *NAMESPACE
32412a0c49cf751f65b267dd84b35b47 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/phangorn
ac4fedc042bf2280ab8928a44530339f *R/phangorn.rdb
9ce3224c6de987dfaf789c63d1567e5d *R/phangorn.rdx
3d8c381b34c5f4571f430ffe0f9acefb *R/sysdata.rdb
0c5bc09b11757538aee6d1835765c05d *R/sysdata.rdx
61b3722df2ead748e0db8595428412a1 *README
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
4b269c2e640293341b9b1c04d4dd7f4e *data/chloroplast.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
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64fff86b1bee1edb0472897565110ada *doc/Ancestral.Rnw
3fa1b05aa8c1ae96dfb5d72b191825cc *doc/Ancestral.pdf
ded9d871b4e54387c14340167f196a93 *doc/IntertwiningTreesAndNetworks.R
9364f4bdf1689f43b2c202c9511515f9 *doc/IntertwiningTreesAndNetworks.Rmd
74435b9f67aa3aca287dcc3ab2c58544 *doc/IntertwiningTreesAndNetworks.html
d24a83a2803108ede87eff4de3c13ae8 *doc/Networx.R
fe641c0b4c7aac7aabf24c47ed6cde40 *doc/Networx.Rmd
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2e0cca02797f23bf9415bb4fd566fce9 *doc/Trees.R
843c9f5979f259b3f49edfe2221524b6 *doc/Trees.Rnw
b489654200512d93b53f21fcf48d4909 *doc/Trees.pdf
efe22febe43dca8113d1bee962f4d7d8 *doc/index.html
5ec124cf0e66f4bccae5e77c63c06608 *doc/phangorn-specials.R
f70ed8003af4fa9913530caf3f3c8ce2 *doc/phangorn-specials.Rnw
7dece6458cfc3bf7eded1e416ecd1c2a *doc/phangorn-specials.pdf
3009f9da02a198cb557d435cc5ad8c7f *extdata/Blosum62.dat
72f496d4c6e937ffe744d25bd8891313 *extdata/Dayhoff.dat
5aa357dab0e72b27023e4302bc37dbad *extdata/FLU.dat
7f63f617d5d29421b0bd90ab8511feb7 *extdata/HIVb.dat
29e1aa10906a86bb9bca6d9c7f98a6cb *extdata/HIVw.dat
ca86e539345fa57de5c77a60308bed09 *extdata/JTT.dat
fdc1176d0c0f2db3de1c9dfd83d3c070 *extdata/MtZoa.dat
106715eba35efc2743ccad7923ac13ce *extdata/RtREV.dat
e05f5a0ca507e4e15e7b95d1ce93b9fa *extdata/VT.dat
fc090d051ce4f18b937448a254e2764e *extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *extdata/lg.dat
917303a3df098f9137c651de0afa78fa *extdata/mtArt.dat
1cd5e39670b86d32b5fe5c27dcc79648 *extdata/mtREV24.dat
0ca0d0e987fcebf847a876779eddd934 *extdata/mtmam.dat
20be734137b889e34006f8b8bd969054 *extdata/trees/RAxML_bestTree.3moles
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5c7b80221c2dc93d4e6a6b857ccb62e8 *extdata/trees/RAxML_bestTree.YCh
0e77d8f9386ddaee1de2f6678530c823 *extdata/trees/RAxML_bestTree.mtG
2f7670326d5ff9235ecd0943944b6d59 *extdata/trees/RAxML_bipartitions.3moles
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75061d3e313e19632dcbce0ef48e9cdc *extdata/trees/RAxML_bipartitions.mtG
2212d49c7269978890887be3686c12f9 *extdata/trees/RAxML_bipartitions.woodmouse
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0d8694f8ea078f981819be215fb724ba *extdata/trees/RAxML_bipartitionsBranchLabels.YCh
abcfbaf31212288e26a67c5b6c30ae70 *extdata/trees/RAxML_bipartitionsBranchLabels.mtG
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086fb65b6bd2d40f09fff513b86d55cc *extdata/trees/RAxML_bootstrap.Wang.out
49ade6ade3f8f08033b887a001243c86 *extdata/trees/RAxML_bootstrap.YCh
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000df141b844795d38e5a755aa360f97 *extdata/trees/RAxML_bootstrap.woodmouse
6cd945acf5464dce8e10c350097e2c20 *extdata/trees/RAxML_distances.Wang.nxs
02888c45178001387b7a5397a3a17d3c *extdata/trees/Splits.txt
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129e8c41182f3557b1b9911625e100b9 *extdata/trees/woodmouse.fasta
421488c1ce8687879f64a350fca6d055 *extdata/trees/woodmouse.mrbayes.nex.con
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e185a8c9c7aed17a3e216cb78d517fd4 *extdata/trees/woodmouse.mrbayes.nex.run2.t
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87fa1533c4dfe7074237cfa2196bcbeb *extdata/wag.dat
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3e2f145d6886983b2db67be6f9357b07 *help/paths.rds
43009017560b21387ba37ce24ef2ab74 *help/phangorn.rdb
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21369690e708dea8efa614e319e18bf4 *html/CI.html
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0256cbe4a8e9fee502993bdb1578e1fc *html/NJ.html
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7ee266d3e1d4e1d7f2c4a19671dc7ae8 *html/SH.test.html
063951a9d7583208eb33ec044b35aaa1 *html/SOWH.test.html
2743fca202516a0740ed965e21d2a9e3 *html/addConfidences.html
95dc3a7de0259780e103c87a00595095 *html/allTrees.html
c9bd905f91f376ff89fc15d7a2af30f2 *html/ancestral.pml.html
23c9cc65a5daf9cc49b71aff8859b585 *html/as.networx.html
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1e78eae76024d74b0c20516eac52b495 *html/bab.html
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41044390375f48f2b375f3e77acaa0b4 *html/consensusNet.html
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11c84d37998f75dccdf358836ce3f180 *html/delta.score.html
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43a3693d21d23faff03acf70d352df79 *html/designTree.html
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9c1d241fa1708013dc5d8d02fdea80dd *html/dist.hamming.html
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721aa58c4aa9e70330f87f6ef004c540 *html/distanceHadamard.html
432437c2516ef769b3597b29913bc158 *html/getClans.html
9e85a200c615f6f583ea80ec5ce083e6 *html/hadamard.html
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dedebad558e21849a2b77186e6ea2e4f *html/neighborNet.html
087074dfd4783402d84bed88fc54ddd7 *html/nni.html
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1af7f313fe0cd17950e0a9b3f01d6d2f *html/phangorn-package.html
4265ffd6d8d7a74676c1006d426edf52 *html/phyDat.html
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0d8e297daf360f0a8f0c2e14ff2f0048 *html/pmlMix.html
9703812e363b8080d1862d2be52b863f *html/pmlPart.html
c091c4cda08e95ffcbfe237f48b0b0ef *html/read.aa.html
815da15d522946fcee29e9173430a4f7 *html/read.nexus.splits.html
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b1d7b92a3c7c64ea2573b9c54f61e1fe *html/splitsNetwork.html
903f02a08753c3c642b77ca57a489c3a *html/superTree.html
77ca6366c97563b1a633e538385c0b1e *html/treedist.html
1b55c5715b8ac39ac328ea410c181910 *html/upgma.html
584408454a62c27feacce52d0c097572 *html/writeDist.html
9739821fcb8cd336d08f19dea1181b02 *html/yeast.html
554a91d7c721bf4a43024d27b27c1e7e *libs/x64/phangorn.dll
