R: Read Genetix Data Files

read.gtx {pegas} | R Documentation

## Read Genetix Data Files

### Description

This function reads allelic data from a Genetix file (.gtx).

### Usage

    read.gtx(file)

### Arguments

`file` | a file name specified by either a variable of mode character or a quoted string.

### Value

A data frame with class `c("loci", "data.frame")`.

### Note

The package adegenet has a similar function, `read.genetix`, but it returns an object of class `"genind"`.

### Author(s)

Emmanuel Paradis

### References

Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N. and Bonhomme, F. (1996–2004) GENETIX 4.05, logiciel sous Windows(TM) pour la genetique des populations. Laboratoire Genome, Populations, Interactions, CNRS UMR 5000, Universite de Montpellier II, Montpellier (France). http://www.genetix.univ-montp2.fr/genetix/intro.htm

### See Also

`read.loci`, `write.loci`, `read.vcf`, `read.genetix`

### Examples

    require(adegenet)
    (X <- read.gtx(system.file("files/nancycats.gtx", package = "adegenet")))
    ## compare with the example in ?read.genetix

[Package pegas version 1.1 Index]