| diffHaplo {pegas} | R Documentation |
This function compares two haplotypes and returns a summary of the differences.
diffHaplo(h, a = 1, b = 2)
h |
an object of class |
a, b |
two integers (or character strings) giving the indices (or labels) of the two haplotypes to be compared. |
This function prints the number of transitions and transversions between both sequences, and returns a data frame with three columns giving the positions of the differences and the nucleotides in each sequence at these positions.
a data frame with three columns named pos (position of the
differences) and the labels of the two haplotypes compared.
Emmanuel Paradis
data(woodmouse) h <- haplotype(woodmouse) diffHaplo(h) # compares the 1st and 2nd haplotypes diffHaplo(h, 1, 3) diffHaplo(h, "I", "III") # same than above but using labels