| transposeRelAbund {patPRO} | R Documentation |
This function will transpose a data frame, with the result maintained as a data frame (unlike other functions which work with matrices). Although this was written with relative abundance tables in mind, it may be applied to other data frame types.
transposeRelAbund(x, sample.id.col="SampleID")
x |
The relative abundance |
sample.id.col |
The Sample ID column name from data frame x. Default is "SampleID". |
| Package: | patPRO |
| Type: | Package |
| Version: | 1.0.0 |
| Date: | 2015-09-18 |
| License: | GPLv3 |
An overview of how to use the package, including the most important functions, is included in the supplemental R notebook patPROExampleWorkflow.html.
Geoffrey Hannigan <ghanni@upenn.edu>, Loesche MA, Hodkinson BP, Mehta S, Elizabeth Grice <egrice@upenn.edu>
patPRO: An R package for the visualization of longitudinal microbiome data. Hannigan GD, Loesche MA, Hodkinson BP, Mehta S, Grice EA.
data("PatProOTU",package="patPRO")
transTestRelAbund <- transposeRelAbund(PatProOTU)