R: Visualizing Temporal Microbiome Data

# Visualizing Temporal Microbiome Data

## Documentation for package ‘patPRO’ version 1.1.0

- DESCRIPTION file.

## Help Pages

patPRO-package | Longitudinal Profiler of Microbiome Data
mergeMapMetaData | Merge Mapping and Data Files
normalizeAlphaDiv | Normalize Alpha Diversity Values for Plotting.
patientMean | Calculate Mean Patient Values.
patPRO | Longitudinal Profiler of Microbiome Data
PatProAlphaDiv | Test Alpha Diversity Data Used as an Example for patPRO.
PatProBacLoad | Test Bacterial Load Data Used as an Example for patPRO.
PatProMap | Test Mapping File Data Used as an Example for patPRO.
PatProOTU | Test Relative Abundance Data Used as an Example for patPRO.
patproPlotThree | Generate Patient Profile of Three Plots.
patproPlotTwo | Generate Patient Profile of Two Plots.
plotBacterialLoad | Plot Supplemental Bacterial Load Information.
plotNormalizedAlphaDiv | Plot Normalized Alpha Diversity.
plotTopTaxa | Plot a Specific Patient Relative Abundance of Top Taxa.
plotTopTaxaMean | Plot the Mean Relative Abundance of Top Taxa.
topAbsAbundDataFrame | Format and Normalize Top Taxa and Bac Load for Plotting.
topAbsAbundPlot | Plot Top Taxa Abundance Normalized to Bacterial Load.
topRelAbundDataFrame | Format Top Taxa Data Frame for Graphing.
transposeRelAbund | Transpose a Data Frame.