R: Add an Image to a Map

mapImage {oce}

R Documentation

Add an Image to a Map

Description

Plot an image on an existing map that was created with mapPlot. (See example 4 for a way to start with a blank map.)

Usage

mapImage(longitude, latitude, z, zlim, zclip = FALSE, breaks, col,
  colormap, border = NA, lwd = par("lwd"), lty = par("lty"),
  missingColor = NA, filledContour = FALSE, gridder = "binMean2D",
  debug = getOption("oceDebug"))

Arguments

`longitude`	vector of longitudes corresponding to `z` matrix.
`latitude`	vector of latitudes corresponding to `z` matrix.
`z`	matrix to be represented as an image.
`zlim`	limit for z (color).
`zclip`	A logical value, `TRUE` indicating that out-of-range `z` values should be painted with `missingColor` and `FALSE` indicating that these values should be painted with the nearest in-range color. If `zlim` is given then its min and max set the range. If `zlim` is not given but `breaks` is given, then the min and max of `breaks` sets the range used for z. If neither `zlim` nor `breaks` is given, clipping is not done, i.e. the action is as if `zclip` were `FALSE`.
`breaks`	The z values for breaks in the color scheme. If this is of length 1, the value indicates the desired number of breaks, which is supplied to `pretty`, in determining clean break points.
`col`	Either a vector of colors corresponding to the breaks, of length 1 plus the number of breaks, or a function specifying colors, e.g. `oce.colorsJet` for a rainbow.
`colormap`	optional colormap, as created by `colormap`. If a `colormap` is provided, then its properties takes precedence over `breaks`, `col`, `missingColor`, and `zclip` specified to `mapImage`.
`border`	Color used for borders of patches (passed to `polygon`); the default `NA` means no border.
`lwd`	line width, used if borders are drawn.
`lty`	line type, used if borders are drawn.
`missingColor`	a color to be used to indicate missing data, or `NA` to skip the drawing of such regions (which will retain whatever material has already been drawn at the regions).
`filledContour`	either a logical value indicating whether to use filled contours to plot the image, or a numerical value indicating the resampling rate to be used in interpolating from lon-lat coordinates to x-y coordinates. See “Details” for how this interacts with `gridder`.
`gridder`	Name of gridding function used if `filledContour` is `TRUE`. This can be either `"binMean2D"` to select `binMean2D` or `"interp"` for `interp`. If not provided, then a selection is made automatically, with `binMean2D` being used if there are more than 10,000 data points in the present graphical view. This `"binMean2D"` method is much faster than `"interp"`.
`debug`	A flag that turns on debugging. Set to 1 to get a moderate amount of debugging information, or to 2 to get more.

Details

Adds an image to an existing map, by analogy to image.

The data are on a regular grid in lon-lat space, but not in the projected x-y space. This means that image cannot be used. Instead, there are two approaches, depending on the value of filledContour.

If filledContour is FALSE, the image “pixels” are with polygon, which can be prohibitively slow for fine grids. However, if filledContour is TRUE or a numerical value, then the “pixels” are remapped into a regular grid and then displayed with .filled.contour. The remapping starts by converting the regular lon-lat grid to an irregular x-y grid using lonlat2map. This irregular grid is then interpolated onto a regular x-y grid with binMean2D or with interp from the akima package, as determined by the gridder argument. If filledContour is TRUE, the dimensions of the regular x-y grid is the same as that of the original lon-lat grid; otherwise, the number of rows and columns are multiplied by the numerical value of filledContour, e.g. the value 2 means to make the grid twice as fine.

Filling contours can produce aesthetically-pleasing results, but the method involves interpolation, so the data are not represented exactly and analysts are advised to compare the results from the two methods (and perhaps various grid refinement values) to guard against misinterpretation.

If a png device is to be used, it is advised to supply arguments type="cairo" and antialias="none"; see [1].

Author(s)

Dan Kelley

References

1. http://codedocean.wordpress.com/2014/02/03/anti-aliasing-and-image-plots/

Examples

## Not run: 
library(oce)
data(coastlineWorld)
data(topoWorld)

## 1. topography
par(mfrow=c(2, 1), mar=c(2, 2, 1, 1))
lonlim <- c(-70, -50)
latlim <- c(40, 50)
topo <- decimate(topoWorld, by=2) # coarse to illustrate filled contours
topo <- subset(topo, latlim[1] < latitude & latitude < latlim[2])
topo <- subset(topo, lonlim[1] < longitude & longitude < lonlim[2])
mapPlot(coastlineWorld, type='l',
        longitudelim=lonlim, latitudelim=latlim,
        projection="+proj=lcc +lat_1=40 +lat_2=50 +lon_0=-60")
breaks <- seq(-5000, 1000, 500)
mapImage(topo, col=oce.colorsGebco, breaks=breaks)
mapLines(coastlineWorld)
box()
mapPlot(coastlineWorld, type='l',
        longitudelim=lonlim, latitudelim=latlim,
        projection="+proj=lcc +lat_1=40 +lat_2=50 +lon_0=-60")
mapImage(topo, filledContour=TRUE, col=oce.colorsGebco, breaks=breaks)
box()
mapLines(coastlineWorld)

## 2. Northern polar region, with color-coded bathymetry
par(mfrow=c(1,1))
drawPalette(c(-5000, 0), zlim=c(-5000, 0), col=oce.colorsJet)
mapPlot(coastlineWorld, projection="+proj=stere +lat_0=90",
        longitudelim=c(-180,180), latitudelim=c(60,120))
mapImage(topoWorld, zlim=c(-5000, 0), col=oce.colorsJet)
mapLines(coastlineWorld[['longitude']], coastlineWorld[['latitude']])

## 3. Levitus SST
par(mfrow=c(1,1))
data(levitus, package='ocedata')
lon <- levitus$longitude
lat <- levitus$latitude
SST <- levitus$SST
par(mar=rep(1, 4))
Tlim <- c(-2, 30)
drawPalette(Tlim, col=oce.colorsJet)
mapPlot(coastlineWorld, projection="+proj=moll", grid=FALSE)
mapImage(lon, lat, SST, col=oce.colorsJet, zlim=Tlim)
mapPolygon(coastlineWorld, col='gray')

## 4. Topography without drawing a coastline first
data(topoWorld)
cm <- colormap(topoWorld[['z']], name='gmt_relief')
drawPalette(colormap=cm)
mapPlot(c(-180,180), c(-90,90), type="n") # defaults to moll projection
mapImage(topoWorld, colormap=cm)

## End(Not run)

[Package oce version 1.0-1 Index]