R: Data Preparation, Estimation and Prediction in Multi-State Models

# Data Preparation, Estimation and Prediction in Multi-State Models

## Documentation for package ‘mstate’ version 0.2.12

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

mstate-package | Data preparation, estimation and prediction in multi-state models
aidssi | Data from the Amsterdam Cohort Studies on HIV infection and AIDS
aidssi2 | Data from the Amsterdam Cohort Studies on HIV infection and AIDS
bmt | BMT data from Klein and Moeschberger
crprep | Function to create weighted data set for competing risks analyses
crprep.default | Function to create weighted data set for competing risks analyses
Cuminc | Calculate nonparametric cumulative incidence functions and associated standard errors
cutLMms | Cut a multi-state data set at a landmark time point
ebmt1 | Data from the European Society for Blood and Marrow Transplantation (EBMT)
ebmt2 | Data from the European Society for Blood and Marrow Transplantation (EBMT)
ebmt3 | Data from the European Society for Blood and Marrow Transplantation (EBMT)
ebmt4 | Data from the European Society for Blood and Marrow Transplantation (EBMT)
ELOS | Expected length of stay
events | Count number of observed transitions
expand.covs | Expand covariates in competing risks dataset in stacked format
expand.covs.default | Expand covariates in competing risks dataset in stacked format
expand.covs.msdata | Expand covariates in multi-state dataset in long format
LMAJ | Landmark Aalen-Johansen method
msboot | Bootstrap function in multi-state models
msfit | Compute subject-specific transition hazards with (co-)variances
msprep | Function to prepare dataset for multi-state modeling in long format from dataset in wide format
mssample | Sample paths through a multi-state model
mstate | Data preparation, estimation and prediction in multi-state models
paths | Find all possible trajectories through a given multi-state model
plot.Cuminc | Calculate nonparametric cumulative incidence functions and associated standard errors
plot.msfit | Plot method for an msfit object
plot.probtrans | Plot method for a probtrans object
print.Cuminc | Calculate nonparametric cumulative incidence functions and associated standard errors
print.msdata | Print method for a msdata object
probtrans | Compute subject-specific or overall transition probabilities with standard errors
prothr | Abnormal prothrombin levels in liver cirrhosis
redrank | Reduced rank proportional hazards model for competing risks and multi-state models
summary.Cuminc | Calculate nonparametric cumulative incidence functions and associated standard errors
summary.msfit | Summary method for an msfit object
summary.probtrans | Summary method for a probtrans object
trans.comprisk | Define transition matrix for multi-state model
trans.illdeath | Define transition matrix for multi-state model
transMat | Define transition matrix for multi-state model
xsect | Make a cross-section of multi-state data at a given time point