R: Parallelized Minimum Redundancy, Maximum Relevance (mRMR)

# Parallelized Minimum Redundancy, Maximum Relevance (mRMR)

## Documentation for package ‘mRMRe’ version 2.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adjacencyMatrix | Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
adjacencyMatrix-method | Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
adjacencyMatrixSum | Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
adjacencyMatrixSum-method | Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
causality | Accessor function for the 'causality' information in a mRMRe.Filter and mRMRe.Network object.
causality-method | Accessor function for the 'causality' information in a mRMRe.Filter and mRMRe.Network object.
cgps.annot | Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
cgps.ge | Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
cgps.ic50 | Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
correlate | Function to compute various correlation measures between two variables
export_concordance_index | Export concordance index
export_filters | Export filters
export_filters_bootstrap | Export filters bootstrap
export_mim | Export mim
featureCount | Accessor function for the 'featureCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
featureCount-method | Accessor function for the 'featureCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
featureData | Accessor function for the 'featureData' information in a mRMRe.Data object
featureData-method | Accessor function for the 'featureData' information in a mRMRe.Data object
featureNames | Accessor function for the 'featureNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
featureNames-method | Accessor function for the 'featureNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
get.thread.count | openMP Thread Count
get_thread_count | openMP Thread Count
mim | Accessor function for the 'mim' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
mim-method | Accessor function for the 'mim' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
mRMR.classic | Class '"mRMRe.Filter"'
mRMR.data | Class '"mRMRe.Data"'
mRMR.ensemble | Class '"mRMRe.Filter"'
mRMR.network | Class '"mRMRe.Network"'
mRMRe.Data-class | Class '"mRMRe.Data"'
mRMRe.Filter-class | Class '"mRMRe.Filter"'
mRMRe.Network-class | Class '"mRMRe.Network"'
priors | Accessor function for the 'priors' information in a mRMRe.Data object
priors-method | Accessor function for the 'priors' information in a mRMRe.Data object
priors<- | Accessor function for the 'priors' information in a mRMRe.Data object
priors<--method | Accessor function for the 'priors' information in a mRMRe.Data object
sampleCount | Accessor function for the 'sampleCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleCount-method | Accessor function for the 'sampleCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleNames | Accessor function for the 'sampleNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleNames-method | Accessor function for the 'sampleNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleStrata | Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleStrata-method | Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleStrata<- | Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleStrata<--method | Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleWeights | Accessor function for the 'sampleWeights' information in a mRMRe.Data object
sampleWeights-method | Accessor function for the 'sampleWeights' information in a mRMRe.Data object
sampleWeights<- | Accessor function for the 'sampleWeights' information in a mRMRe.Data object
sampleWeights<--method | Accessor function for the 'sampleWeights' information in a mRMRe.Data object
scores | mRMR Scores as per the MI gain for each feature
scores-method | mRMR Scores as per the MI gain for each feature
set.thread.count | openMP Thread Count
set_thread_count | openMP Thread Count
solutions | Basic result of the mRMR procedure
solutions-method | Basic result of the mRMR procedure
subsetData | Returns a mRMRe.Data object using a subset of the current mRMRe.Data object.
subsetData-method | Returns a mRMRe.Data object using a subset of the current mRMRe.Data object.
target | mRMR Target(s)
target-method | mRMR Target(s)
visualize | mRMRe Network display
visualize-method | mRMRe Network display