| summary_mQTL {mQTL} | R Documentation |
This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.
summary_mQTL(results, Th = 5)
results |
mQTL mapping results |
Th |
Threshold of the top accepted LOD |
Generates a text file containing a table of results
returns Summaries
Jean-Baptiste Cazier and Lyamine Hedjazi
## Not run:
## Pre-process data
infile<-"ReducedData.dat" ## Reduced data by SRV
cleangen<-"CleanGenoFile.dat" ## Genotype data file in csvs format
nperm <- 0 ## Number of permutations
MQTL_results<-process_mQTL(infile, cleangen, nperm))
T=10 ## LOD threshold
summary_mQTL(results,T=8)## summarizes mQTL results in a table
## End(Not run)