R: Plot top LOD results

post_mQTL {mQTL}

R Documentation

Plot top LOD results

Description

Function to plot the results of a given run

Usage

post_mQTL(results, probs = c(0.95, 0.99, 0.999, 0.9999))

Arguments

`results`	results of mQTL analysis.
`probs`	numeric vector of probabilities with values in [0,1]. (Values up to 2e-14 outside that range are accepted and moved to the nearby endpoint.).

Details

This function plots differents results corresponding to top LOD marker

Value

It returns graphs and summaries

Author(s)

Jean-Baptiste Cazier

Examples

  ## Not run: 
## Pre-process data 

    infile<-"ReducedData.dat" ## Reduced data by SRV
    cleangen<-"CleanGenoFile.dat" ## Genotype data file in csvs format
    nperm <- 0 ## Number of permutations
    MQTL_results<-process_mQTL(infile, cleangen, nperm))

    post_mQTL(results)## Plot mQTL results


## End(Not run)

[Package mQTL version 1.0 Index]