R: Function to summarize the results of a all the runs and their...

summary_mQTL {mQTL} | R Documentation

## Function to summarize the results of a all the runs and their differences

### Description

This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.

### Usage

    summary_mQTL(results, Th = 5)

### Arguments

`results` | mQTL mapping results
`Th` | Threshold of the top accepted LOD

### Details

Generates a text file containing a table of results

### Value

returns Summaries

### Author(s)

Jean-Baptiste Cazier and Lyamine Hedjazi

### See Also

`pre_mQTL`

### Examples

      ## Not run:

    ## Pre-process data

        infile<-"ReducedData.dat" ## Reduced data by SRV
        cleangen<-"CleanGenoFile.dat" ## Genotype data file in csvs format
        nperm <- 0 ## Number of permutations
        MQTL_results<-process_mQTL(infile, cleangen, nperm))

        T=10 ## LOD threshold
        summary_mQTL(results,T=8)## summarizes mQTL results in a table

    ## End(Not run)

[Package mQTL version 1.0 Index]