R: Routine to reformat the data into the required format

format_mQTL {mQTL} | R Documentation

## Routine to reformat the data into the required format

### Description

This function enables to reformat data into the proper format. The user should provides in input metabolomic dataset, Genotype dataset and a dataset containing sex and pgm (parental grandmother).

### Usage

    format_mQTL(datafile, genofile, physdat, outdat, outgeno)

### Arguments

`datafile` | metabolomic data file
`genofile` | genotype data file
`physdat` | a file containing sex and pgm
`outdat` | phenotype data (metabolomic data + sex + pgm) in the format csvs
`outgeno` | genotype data

### Value

It returns phynotype and genotype files in the proper format

### Author(s)

Lyamine Hedjazi

### See Also

`align_mQTL`,

### Examples

      ## Not run:
    ## Clean the raw data to match the genotype and phenotype and create the proper format

      rawfile<-"MetaboFile.dat" ## Metabolomic data file
      genofile<-"GenoFile.dat" ## Genotype data file
      physiodat="physiodat.dat" ## data file containing sex and pgm
      cleandat<-"CleanMetaboFile.dat" ## Metabolomic data file in csvs format
      cleangen<-"CleanGenoFile.dat" ## Genotype data file in csvs format

      format_mQTL(rawfile,genofile,physiodat, cleandat,cleangen)

    ## End(Not run)

[Package mQTL version 1.0 Index]