R: Dump variants as fasta

dumpVariantMap.mlgtResult {mlgt} | R Documentation

## Dump variants as fasta

### Description

Output unique variants to one or more fasta files.

### Usage

      dumpVariantMap.mlgtResult(resultObject,
        markers = names(resultObject@markers),
        file = paste(resultObject@projectName, resultObject@runName, "seqDump", sep = "."),
        singleFile = TRUE)

### Arguments

`resultObject` | An object of class `mlgtResult` containing the sequence variants.
`markers` | For which markers do you want to output sequences.
`file` | An output file name. If not supplied, one is created.
`singleFile` | Whether to output results for all markers to a single file or to one file per marker.

### Details

This is a stop-gap function while I decide how best to handle output of full sequences.

### Value

Writes fasta files in the current directory.

[Package mlgt version 0.16 Index]