R: An S4 class to hold results from 'mlgt'

mlgtResult {mlgt} | R Documentation

## An S4 class to hold results from `mlgt`

### Description

Extends `mlgtDesign`

### Details

projectName

  In which project does this run belong

runName

  Which run was this. An identifier for the sequnece run

markers

  A list of named sequences.

samples

  A vector of sample names

fTags

  A vector of named sequence of MIDs used to barcode samples at the 5' end.

rTags

  A vector of named sequence of MIDs used to barcode samples at the 3' end. May be same as `fTags`

inputFastaFile

  The name of the file containing sequences. Currently only fasta format is supported. It is up to you to pre-filter the sequences.

runSummaryTable

  A summary table with one row per marker

alleleDb

  A list of objects of class `variantMap`. Contains all variants returned by `mlgt`

markerSampleList

  A list of tables, one table per marker giving results for each sample/MID

### See Also

`mlgtDesign`, `prepareMlgtRun`, `mlgt`

[Package mlgt version 0.16 Index]