R: Results from 'callGenotypes'

genotypeCall {mlgt} | R Documentation

## Results from `callGenotypes`

### Description

An S4 class containing a table and parameter values returned by `callGenotypes`

### Details

projectName

  In which project does this run belong

runName

  Which run was this. An identifier for the sequence run

marker

  Which marker was this.

genotypeTable

  A data frame with variant counts, statistics, genotype calls and, optionally, allele names.

callMethod

  Which method was used to call genotypes

callParameters

  a named list containing parameter values used in the call

mappedToAlleles

  TRUE/FALSE whether an attempt was made to map the variants to a db on known alleles.

alleleDbName

  A list of objects of class `variantMap`. Contains all variants returned by `mlgt`

### See Also

`callGenotypes`, `writeGenotypeCallsToFile`

[Package mlgt version 0.16 Index]