R: Dump variants as fasta

dumpVariantMap.mlgtResult {mlgt}

R Documentation

Dump variants as fasta

Description

Output unique variants to one or more fasta files.

Usage

  dumpVariantMap.mlgtResult(resultObject,
    markers = names(resultObject@markers),
    file = paste(resultObject@projectName, resultObject@runName, "seqDump", sep = "."),
    singleFile = TRUE)

Arguments

`resultObject`	An object of class `mlgtResult` containing the sequence variants.
`markers`	For which markers do you want to output sequences.
`file`	An output file name. If not supplied, one is created.
`singleFile`	Whether to output results for all markers to a single file or to one file per marker.

Details

This is a stop-gap function while I decide how best to handle output of full sequences.

Value

Writes fasta files in the current directory.

[Package mlgt version 0.16 Index]