R: Inference for Hidden Markov and Semi-Markov Models

# Inference for Hidden Markov and Semi-Markov Models

## Documentation for package ‘mhsmm’ version 0.4.16

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

addStates | Adds a bar representing state sequence.
createTransition | Smoothing a discrete time series.
dmvnorm.hsmm | Emission ensity function for a multivariate normal emission distribution
dnorm.hsmm | Emission density function for normal emission distribution
dpois.hsmm | Emission density function for Poisson emission distribution
gammafit | Parameter estimation for the Gamma distribution
hmmfit | fit a hidden Markov model
hmmspec | Specificatin of HMMs
hsmmfit | fit a hidden semi-Markov model
hsmmspec | Hidden semi-Markov model specification
mstep.mvnorm | Performs re-estimation (the M-step) for a multivariate normal emission distribution
mstep.norm | Performs re-estimation (the M-step) for a normal emission distribution
mstep.pois | Performs re-estimation (the M-step) for a Poisson emission distribution
plot.hsmm | Plot function for hsmms
plot.hsmm.data | Plot function for hsmm data
predict.hmm | Prediction function for hmm
predict.hmmspec | Prediction function for hmmspec
predict.hsmm | Prediction for hsmms
predict.hsmmspec | Prediction for hsmmspec
predict.smoothDiscrete | Smoothing a discrete time series.
print.hmm | Print method for hmm objects
print.hmmspec | Print function for hmmspec
print.hsmmspec | Print function for hsmmspec
print.smoothDiscrete | Smoothing a discrete time series.
reproai | Artificial insemination times for seven cows
reprocows | Reproductive data from seven dairy cows
reproppa | Observed lengths of post-partum anoestrus for 73 dairy cows
rmvnorm.hsmm | Random number generation from a multivariate normal distributed emission distribution
rnorm.hsmm | Random number generation from a normally distributed emission distribution
rpois.hsmm | Random number generation from a Poisson distributed emission distribution
sim.mc | Markov chain simulation
simulate.hmmspec | Simulation of hidden Markov models
simulate.hsmmspec | Simulation for HSMMs
smooth.discrete | Smoothing a discrete time series.
summary.hmm | Summary method for hmm objects
summary.hsmm | Summary function for hsmm
summary.smoothDiscrete | Smoothing a discrete time series.