R: Simulated p-values

rawpval {metaRNASeq} | R Documentation

## Simulated p-values

### Description

The p-values provided here result from the following procedure: 1) simulation of two RNA-seq experiments with four replicates in each condition via the `sim.function`, 2) analysis of differentially expressed tags using the DESeq package.

### Usage

    data(rawpval)

### Format

List of length 2, where each list is a vector containing the raw p-values for 14,456 genes from individual differential analyses (obtained using DESeq v1.8.3) of each of the simulated RNA-seq datasets.

### Details

It is possible to reproduce these p-values using the procedure described in the package vignette.

### References

A. Rau, G. Marot and F. Jaffrezic (2014). Differential meta-analysis of RNA-seq data. BMC Bioinformatics 15:91

### Examples

    data(rawpval)
    ## Maybe str(rawpval)

[Package metaRNASeq version 1.0.2 Index]