R: Mean simulation parameters

param {metaRNASeq} | R Documentation

## Mean simulation parameters

### Description

Mean simulation parameters obtained from the analysis of a real dataset

### Usage

    data(param)

### Format

A data frame with 26408 observations on the following 3 variables.

`mucond1`

  a numeric vector with mean parameters for condition 1

`mucond2`

  a numeric vector with mean parameters for condition 2

`DE`

  a logical vector indicating which tags are differentially expressed (value 1)

### Details

Mean parameters provided in this package are empirical means (obtained after normalization for library size differences) of real data described in the following references.

### Source

Supplementary material of (Dillies et al., 2013) paper.

### References

M.A. Dillies, A. Rau, J. Aubert, C. Hennequet-Antier, M. Jeanmougin, N. Servant, C. Keime, G. Marot, D. Castel, J. Estelle, G. Guernec, B. Jagla, L. Jouneau, D. Laloe, C. Le Gall, B. Schaeffer, S. Le Crom, M. Guedj and F. Jaffrezic, on behalf of the French StatOmique Consortium (2013) A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Briefings in Bioinformatics 14(6):671-83 .

T. Strub, S. Giuliano, T. Ye, et al. (2011) Essential role of microphthalmia transcription factor for DNA replication, mitosis and genomic stability in melanoma. emphOncogene 30:2319-32.

### Examples

    data(param)

[Package metaRNASeq version 1.0.2 Index]