R: Artificial data for Matrix eQTL sample code: SNP location...

snpsloc {MatrixEQTL} | R Documentation

## Artificial data for Matrix eQTL sample code: SNP location file.

### Description

Artificial SNP location file for 15 markers.

snpid | chr | pos
Snp_01 | chr1 | 721289
Snp_02 | chr1 | 752565
... | ... | ...

### Format

A data frame with 3 columns.

`snpid`

  A column with SNP names. The order does not have to match the genotype data set.

`chr`

  Chromosome number, i.e. chr1.

`pos`

  Coordinate of the SNP.

### Author(s)

Andrey A Shabalin andrey.shabalin@gmail.com

### References

The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/

### See Also

See `Matrix_eQTL_engine` for reference and sample code.

[Package MatrixEQTL version 2.2 Index]