plot.OCG {linkcomm}R Documentation

The OCG Plotting Function

Description

This function plots various different OCG graphs.

Usage

## S3 method for class 'OCG'
plot(x, type = "", ...)

Arguments

x

An object of class OCG.

type

A character string specifying the type of plot. Can be one of "members" or "graph". See Details below.

...

Additional arguments to be passed to plot.

Details

"members" plots a community membership matrix;
"graph" plots a graph layout of the network with coloured link communities.

See the OCG plotting function for details of arguments that can be passed to plot.OCG: plotOCGraph, plotLinkCommMembers.

Value

Plots to the current device.

Author(s)

Alex T. Kalinka alex.t.kalinka@gmail.com

References

Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.

See Also

plotOCGraph, plotLinkCommMembers

Examples

## Generate graph and extract OCG communities.
g <- swiss[,3:4]
oc <- getOCG.clusters(g)

## Plot a graph of OCG clusters.
plot(oc, type = "graph")
[Package linkcomm version 1.0-14 Index]