R: The 'OCG' Plotting Function

plot.OCG {linkcomm} | R Documentation

## The `OCG` Plotting Function

### Description

This function plots various different `OCG` graphs.

### Usage

    ## S3 method for class 'OCG'
    plot(x, type = "", ...)

### Arguments

`x` | An object of class `OCG`.
`type` | A character string specifying the type of plot. Can be one of `"members"` or `"graph"`. See Details below.
`...` | Additional arguments to be passed to `plot`.

### Details

`"members"` plots a community membership matrix;
`"graph"` plots a graph layout of the network with coloured link communities.
See the `OCG` plotting function for details of arguments that can be passed to `plot.OCG`: `plotOCGraph`, `plotLinkCommMembers`.

### Value

Plots to the current device.

### Author(s)

Alex T. Kalinka alex.t.kalinka@gmail.com

### References

Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.

### See Also

`plotOCGraph`, `plotLinkCommMembers`

### Examples

    ## Generate graph and extract OCG communities.
    g <- swiss[,3:4]
    oc <- getOCG.clusters(g)

    ## Plot a graph of OCG clusters.
    plot(oc, type = "graph")

[Package linkcomm version 1.0-14 Index]