R: The Iterative Signature Algorithm

# The Iterative Signature Algorithm

## Documentation for package ‘isa2’ version 0.3.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

isa2-package | The isa package
generate.seeds | Generate seed vectors for the Iterative Signature Algorithm
images | Image plots of biclusters
isa | Iterative Signature Algorithm
isa-method | Iterative Signature Algorithm
isa.biclust | Convert ISA modules to a Biclust class, as defined by the biclust package
isa.filter.robust | Robustness of ISA biclusters and PPA co-modules
isa.filter.robust-method | Robustness of ISA biclusters and PPA co-modules
isa.in.silico | Generate in-silico input data for biclustering algorithms
isa.iterate | The Iterative Signature Algorithm
isa.iterate-method | The Iterative Signature Algorithm
isa.normalize | Normalize input data for use with ISA
isa.normalize-method | Normalize input data for use with ISA
isa.option | Options for the isa package
isa.sweep | Create a hierarchical structure of ISA biclusters
isa.sweep-method | Create a hierarchical structure of ISA biclusters
isa.unique | Filter out biclusters that are very similar to each other
isa.unique-method | Filter out biclusters that are very similar to each other
plotModules | Image plots of biclusters
plotModules-method | Image plots of biclusters
ppa | The Ping-Pong Algorithm
ppa-method | The Ping-Pong Algorithm
ppa.filter.robust | Robustness of ISA biclusters and PPA co-modules
ppa.filter.robust-method | Robustness of ISA biclusters and PPA co-modules
ppa.in.silico | Generate in-silico input data for testing the PPA algorithm
ppa.iterate | The Ping-Pong Algorithm
ppa.iterate-method | The Ping-Pong Algorithm
ppa.normalize | Normalize input data for use with the PPA
ppa.normalize-method | Normalize input data for use with the PPA
ppa.unique | Filter co-modules that are very similar to each other
ppa.unique-method | Filter co-modules that are very similar to each other
robustness | Robustness of ISA biclusters and PPA co-modules
robustness-method | Robustness of ISA biclusters and PPA co-modules
sweep.graph | Create a hierarchical structure of ISA biclusters
sweep.graph-method | Create a hierarchical structure of ISA biclusters