R: Public repertoire visualisation

vis.immunr_public_repertoire {immunarch} | R Documentation

## Public repertoire visualisation

### Description

Public repertoire visualisation

### Usage

    ## S3 method for class 'immunr_public_repertoire'
    vis(.data, .plot = c("freq", "clonotypes"), ...)

### Arguments

`.data` | Public repertoire, an output from pubRep.
`.plot` | A string specifying the plot type: - "freq" for visualisation of the distribution of occurrences of clonotypes and their frequencies using vis_public_frequencies. - "clonotypes" for visualisation of public clonotype frequenciy correlations between pairs of samples using vis_public_clonotypes
`...` | Further arguments passed vis_public_frequencies or vis_public_clonotypes, depending on the ".plot" argument.

### Value

A ggplot2 object.

### Examples

    data(immdata)
    immdata$data <- lapply(immdata$data, head, 500)
    pr <- pubRep(immdata$data, .verbose = FALSE)
    vis(pr, "freq")
    vis(pr, "freq", .type = "none")

    vis(pr, "clonotypes", 1, 2)

[Package immunarch version 0.6.7 Index]