vis_heatmap2 {immunarch}R Documentation

Visualisation of matrices using pheatmap-based heatmaps

Description

Visualise matrices with the functions based on the pheatmap package with minimum amount of arguments.

Usage

vis_heatmap2(
  .data,
  .title = NA,
  .labs = NA,
  .color = colorRampPalette(c("#67001f", "#d6604d", "#f7f7f7", "#4393c3",
    "#053061"))(1024),
  ...
)

Arguments

.data

Input matrix. Column names and row names (if presented) will be used as names for labs.

.title

The text for the plot's title (same as the "main" argument in pheatmap).

.labs

A character vector of length two with names for x-axis and y-axis, respectively.

.color

A vector specifying the colors (same as the "color" argument in pheatmap). Pass NA to use the default pheatmap colors.

...

Other arguments for the pheatmap function.

Value

A pheatmap object.

See Also

vis, repOverlap

Examples

data(immdata)
ov <- repOverlap(immdata$data)
vis_heatmap2(ov)
[Package immunarch version 0.6.5 Index]