# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# D:\a\1\s\recipe, last modified Fri May 28 14:09:34 2021
# ------------------------------------------------

package:
  name: r-immunarch
  version: 0.6.5
source:
  sha256: 2c80a62700130b5f2d862054e4c2ad6538484a50192cf630119bcc3106a9c16f
  url:
    - https://cran.r-project.org/src/contrib/Archive/immunarch/immunarch_0.6.5.tar.gz
    - https://cran.r-project.org/src/contrib/immunarch_0.6.5.tar.gz
build:
  merge_build_host: true
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40ha856d6a_0
requirements:
  build:
    - m2-bash 4.3.042 5
    - m2-coreutils 8.25 102
    - m2-filesystem 2016.04 4
    - m2-gcc-libs 5.3.0 4
    - m2-gmp 6.1.0 3
    - m2-libbz2 1.0.6 3
    - m2-libiconv 1.14 3
    - m2-libintl 0.19.7 4
    - m2-make 4.1 5
    - m2-msys2-runtime 2.5.0.17080.65c939c 3
    - m2-sed 4.2.2 3
    - m2-zip 3.0 2
    - m2w64-binutils 2.25.1 5
    - m2w64-bzip2 1.0.6 6
    - m2w64-crt-git 5.0.0.4636.2595836 2
    - m2w64-gcc 5.3.0 6
    - m2w64-gcc-ada 5.3.0 6
    - m2w64-gcc-fortran 5.3.0 6
    - m2w64-gcc-libgfortran 5.3.0 6
    - m2w64-gcc-libs 5.3.0 7
    - m2w64-gcc-libs-core 5.3.0 7
    - m2w64-gcc-objc 5.3.0 6
    - m2w64-gmp 6.1.0 2
    - m2w64-headers-git 5.0.0.4636.c0ad18a 2
    - m2w64-isl 0.16.1 2
    - m2w64-libiconv 1.14 6
    - m2w64-libmangle-git 5.0.0.4509.2e5a9a2 2
    - m2w64-libwinpthread-git 5.0.0.4634.697f757 2
    - m2w64-make 4.1.2351.a80a8b8 2
    - m2w64-mpc 1.0.3 3
    - m2w64-mpfr 3.1.4 4
    - m2w64-pkg-config 0.29.1 2
    - m2w64-toolchain 5.3.0 7
    - m2w64-toolchain_win-64 2.4.0 0
    - m2w64-tools-git 5.0.0.4592.90b8472 2
    - m2w64-windows-default-manifest 6.4 3
    - m2w64-winpthreads-git 5.0.0.4634.697f757 2
    - m2w64-zlib 1.2.8 10
    - msys2-conda-epoch 20160418 1
  host:
    - _r-mutex 1.0.1 anacondar_1
    - intel-openmp 2021.2.0 h57928b3_616
    - libblas 3.9.0 9_mkl
    - libiconv 1.16 he774522_0
    - liblapack 3.9.0 9_mkl
    - m2w64-bwidget 1.9.10 2
    - m2w64-bzip2 1.0.6 6
    - m2w64-expat 2.1.1 2
    - m2w64-fftw 3.3.4 6
    - m2w64-flac 1.3.1 3
    - m2w64-gcc-libgfortran 5.3.0 6
    - m2w64-gcc-libs 5.3.0 7
    - m2w64-gcc-libs-core 5.3.0 7
    - m2w64-gettext 0.19.7 2
    - m2w64-gmp 6.1.0 2
    - m2w64-gsl 2.1 2
    - m2w64-icu 58.2 2
    - m2w64-libiconv 1.14 6
    - m2w64-libjpeg-turbo 1.4.2 3
    - m2w64-libogg 1.3.2 3
    - m2w64-libpng 1.6.21 2
    - m2w64-libsndfile 1.0.26 2
    - m2w64-libtiff 4.0.6 2
    - m2w64-libvorbis 1.3.5 2
    - m2w64-libwinpthread-git 5.0.0.4634.697f757 2
    - m2w64-libxml2 2.9.3 3
    - m2w64-mpfr 3.1.4 4
    - m2w64-nlopt 2.4.2 3
    - m2w64-pcre2 10.34 0
    - m2w64-speex 1.2rc2 3
    - m2w64-speexdsp 1.2rc3 3
    - m2w64-tcl 8.6.5 3
    - m2w64-tk 8.6.5 3
    - m2w64-tktable 2.10 5
    - m2w64-wineditline 2.101 5
    - m2w64-xz 5.2.2 2
    - m2w64-zlib 1.2.8 10
    - mkl 2021.2.0 hb70f87d_389
    - msys2-conda-epoch 20160418 1
    - r-abind 1.4_5 r40hc72bb7e_1003
    - r-airr 1.3.0 r40hc72bb7e_0
    - r-assertthat 0.2.1 r40hc72bb7e_2
    - r-backports 1.2.1 r40h6d2157b_0
    - r-base 4.0.5 hddad469_1
    - r-base64enc 0.1_3 r40h6d2157b_1004
    - r-blob 1.2.1 r40hc72bb7e_1
    - r-boot 1.3_28 r40hc72bb7e_0
    - r-brio 1.1.2 r40h6d2157b_0
    - r-broom 0.7.6 r40hc72bb7e_0
    - r-bslib 0.2.5.1 r40hc72bb7e_0
    - r-cachem 1.0.5 r40h6d2157b_0
    - r-callr 3.7.0 r40hc72bb7e_0
    - r-car 3.0_10 r40hc72bb7e_0
    - r-cardata 3.0_4 r40h6115d3f_0
    - r-cellranger 1.1.0 r40hc72bb7e_1003
    - r-circlize 0.4.12 r40hc72bb7e_0
    - r-class 7.3_19 r40h6d2157b_0
    - r-cli 2.5.0 r40hc72bb7e_0
    - r-clipr 0.7.1 r40hc72bb7e_0
    - r-cluster 2.1.2 r40he816bda_0
    - r-colorspace 2.0_1 r40h6d2157b_0
    - r-commonmark 1.7 r40h6d2157b_1002
    - r-conquer 1.0.2 r40h01f9f87_1
    - r-corrplot 0.88 r40hc72bb7e_0
    - r-cowplot 1.1.1 r40hc72bb7e_0
    - r-cpp11 0.2.7 r40hc72bb7e_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-crosstalk 1.1.1 r40hc72bb7e_0
    - r-curl 4.3.1 r40h6d2157b_0
    - r-data.table 1.14.0 r40h6d2157b_0
    - r-dbi 1.1.1 r40hc72bb7e_0
    - r-dbplyr 2.1.1 r40hc72bb7e_0
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    - r-digest 0.6.27 r40ha856d6a_0
    - r-diptest 0.76_0 r40h6d2157b_0
    - r-dplyr 1.0.6 r40ha856d6a_1
    - r-dt 0.18 r40hc72bb7e_0
    - r-dtplyr 1.1.0 r40hc72bb7e_0
    - r-ellipse 0.4.2 r40hc72bb7e_0
    - r-ellipsis 0.3.2 r40h6d2157b_0
    - r-evaluate 0.14 r40hc72bb7e_2
    - r-factoextra 1.0.7 r40hc72bb7e_1
    - r-factominer 2.4 r40hc72bb7e_0
    - r-fansi 0.5.0 r40h6d2157b_0
    - r-farver 2.1.0 r40ha856d6a_0
    - r-fastmap 1.1.0 r40ha856d6a_0
    - r-flashclust 1.01_2 r40he816bda_1006
    - r-flexmix 2.3_17 r40hc72bb7e_0
    - r-forcats 0.5.1 r40hc72bb7e_0
    - r-foreign 0.8_81 r40h6d2157b_0
    - r-fpc 2.2_9 r40hc72bb7e_0
    - r-fs 1.5.0 r40ha856d6a_0
    - r-generics 0.1.0 r40hc72bb7e_0
    - r-ggalluvial 0.12.3 r40hc72bb7e_0
    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-ggpubr 0.4.0 r40hc72bb7e_0
    - r-ggrepel 0.9.1 r40ha856d6a_0
    - r-ggsci 2.9 r40hc72bb7e_1003
    - r-ggseqlogo 0.1 r40hc72bb7e_1003
    - r-ggsignif 0.6.1 r40hc72bb7e_0
    - r-globaloptions 0.1.2 r40ha770c72_0
    - r-glue 1.4.2 r40h6d2157b_0
    - r-gridextra 2.3 r40hc72bb7e_1003
    - r-gtable 0.3.0 r40hc72bb7e_3
    - r-haven 2.4.1 r40h09f486c_0
    - r-highr 0.9 r40hc72bb7e_0
    - r-hms 1.1.0 r40hc72bb7e_0
    - r-htmltools 0.5.1.1 r40ha856d6a_0
    - r-htmlwidgets 1.5.3 r40hc72bb7e_0
    - r-httpuv 1.6.1 r40ha856d6a_0
    - r-isoband 0.2.4 r40ha856d6a_0
    - r-jquerylib 0.1.4 r40hc72bb7e_0
    - r-jsonlite 1.7.2 r40h6d2157b_0
    - r-kernlab 0.9_29 r40h399f8d5_2
    - r-knitr 1.33 r40hc72bb7e_0
    - r-labeling 0.4.2 r40hc72bb7e_0
    - r-later 1.2.0 r40ha856d6a_0
    - r-lattice 0.20_44 r40h6d2157b_0
    - r-lazyeval 0.2.2 r40h6d2157b_2
    - r-leaps 3.1 r40he816bda_2
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-lme4 1.1_27 r40ha856d6a_0
    - r-magrittr 2.0.1 r40h6d2157b_1
    - r-maptools 1.1_1 r40h6d2157b_0
    - r-markdown 1.1 r40h6d2157b_1
    - r-mass 7.3_54 r40h6d2157b_0
    - r-matrix 1.3_3 r40hd2e18ed_0
    - r-matrixmodels 0.5_0 r40hc72bb7e_0
    - r-matrixstats 0.58.0 r40h6d2157b_0
    - r-mclust 5.4.7 r40hb106f1f_0
    - r-mgcv 1.8_35 r40hd2e18ed_0
    - r-mime 0.10 r40h6d2157b_0
    - r-minqa 1.2.4 r40h96779af_1006
    - r-modeltools 0.2_23 r40hc72bb7e_1
    - r-munsell 0.5.0 r40hc72bb7e_1003
    - r-nlme 3.1_152 r40he816bda_0
    - r-nloptr 1.2.2.2 r40ha856d6a_0
    - r-nnet 7.3_16 r40h6d2157b_0
    - r-numderiv 2016.8_1.1 r40hc72bb7e_3
    - r-openxlsx 4.2.3 r40ha856d6a_0
    - r-patchwork 1.1.1 r40hc72bb7e_0
    - r-pbkrtest 0.5.1 r40hc72bb7e_0
    - r-pheatmap 1.0.12 r40hc72bb7e_2
    - r-pillar 1.6.1 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40hc72bb7e_1
    - r-pkgload 1.2.1 r40ha856d6a_0
    - r-plyr 1.8.6 r40ha856d6a_1
    - r-polynom 1.4_0 r40hc72bb7e_2
    - r-prabclus 2.3_2 r40hc72bb7e_1
    - r-praise 1.0.0 r40hc72bb7e_1004
    - r-prettyunits 1.1.1 r40hc72bb7e_1
    - r-processx 3.5.2 r40h6d2157b_0
    - r-progress 1.2.2 r40hc72bb7e_2
    - r-promises 1.2.0.1 r40ha856d6a_0
    - r-ps 1.6.0 r40h6d2157b_0
    - r-purrr 0.3.4 r40h6d2157b_1
    - r-quantreg 5.85 r40hb106f1f_0
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rappdirs 0.3.3 r40h6d2157b_0
    - r-rcolorbrewer 1.1_2 r40h785f33e_1003
    - r-rcpp 1.0.6 r40ha856d6a_0
    - r-rcpparmadillo 0.10.5.0.0 r40h399f8d5_0
    - r-rcppeigen 0.3.3.9.1 r40h399f8d5_0
    - r-readr 1.4.0 r40ha856d6a_0
    - r-readxl 1.3.1 r40h09f486c_4
    - r-rematch 1.0.1 r40hc72bb7e_1003
    - r-rematch2 2.1.2 r40hc72bb7e_1
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    - r-rio 0.5.26 r40hc72bb7e_0
    - r-rlang 0.4.11 r40h6d2157b_0
    - r-robustbase 0.93_7 r40hb106f1f_0
    - r-rprojroot 2.0.2 r40hc72bb7e_0
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    - r-rtsne 0.15 r40h01f9f87_3
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    - r-scatterplot3d 0.3_41 r40hc72bb7e_1003
    - r-shape 1.4.6 r40ha770c72_0
    - r-shiny 1.6.0 r40hc72bb7e_0
    - r-shinythemes 1.2.0 r40hc72bb7e_0
    - r-sourcetools 0.1.7 r40hfa435f1_1002
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    - r-stringr 1.4.0 r40hc72bb7e_2
    - r-testthat 3.0.2 r40ha856d6a_0
    - r-tibble 3.1.2 r40h6d2157b_0
    - r-tidyr 1.1.3 r40ha856d6a_0
    - r-tidyselect 1.1.1 r40h6addd8b_0
    - r-upsetr 1.4.0 r40hc72bb7e_2
    - r-utf8 1.2.1 r40h6d2157b_0
    - r-vctrs 0.3.8 r40h6d2157b_1
    - r-viridis 0.6.1 r40hc72bb7e_0
    - r-viridislite 0.4.0 r40hc72bb7e_0
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.2 r40hc72bb7e_0
    - r-xfun 0.23 r40ha856d6a_0
    - r-xtable 1.8_4 r40hc72bb7e_3
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    - r-zip 2.1.1 r40h6d2157b_0
    - tbb 2021.2.0 h2d74725_0
    - vc 14.2 hb210afc_4
    - vs2015_runtime 14.28.29325 h5e1d092_4
  run:
    - m2w64-gcc-libs
    - r-airr
    - r-base >=4.0,<4.1.0a0
    - r-circlize
    - r-data.table >=1.12.6
    - r-dbplyr >=1.4.0
    - r-dplyr >=0.8.0
    - r-dtplyr >=1.0.0
    - r-factoextra >=1.0.4
    - r-fpc
    - r-ggalluvial >=0.10.0
    - r-ggplot2 >=3.1.0
    - r-ggpubr >=0.2
    - r-ggrepel >=0.8.0
    - r-ggseqlogo
    - r-magrittr
    - r-mass >=7.3
    - r-patchwork
    - r-pheatmap >=1.0.12
    - r-plyr
    - r-rcpp >=1.0
    - r-readr >=1.3.1
    - r-readxl >=1.3.1
    - r-reshape2 >=1.4.2
    - r-rlang >=0.4
    - r-rtsne >=0.15
    - r-scales
    - r-shiny >=1.4.0
    - r-shinythemes
    - r-stringr >=1.4.0
    - r-tibble >=2.0
    - r-upsetr >=1.4.0
test:
  commands:
    - '"%R%" -e "library(''immunarch'')"'
about:
  home: https://immunarch.com/, https://github.com/immunomind/immunarch
  license: AGPL-3.0-only
  license_family: AGPL
  license_file:
    - D:\bld\r-immunarch_1622211169682\_h_env/lib/R/share/licenses/AGPL-3
  summary: 'A comprehensive framework for bioinformatics exploratory analysis of bulk
    and single-cell T-cell receptor and antibody repertoires. It provides seamless
    data loading, analysis and visualisation for AIRR (Adaptive Immune Receptor Repertoire)
    data, both bulk immunosequencing (RepSeq) and single-cell sequencing (scRNAseq).
    It implements most of the widely used AIRR analysis methods, such as: clonality
    analysis, estimation of repertoire similarities in distribution of clonotypes
    and gene segments, repertoire diversity analysis, annotation of clonotypes using
    external immune receptor databases and clonotype tracking in vaccination and cancer
    studies. A successor to our previously published ''tcR'' immunoinformatics package
    (Nazarov 2015) <doi:10.1186/s12859-015-0613-1>.'
extra:
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - berombau
    - conda-forge/r
