R: A function to generate reproducibility index plot.

plotRI {iCluster} | R Documentation

## A function to generate reproducibility index plot.

### Description

A function to generate reproducibility index plot.

### Usage

    plotRI(cv.fit)

### Arguments

`cv.fit` | A tune.iCluster2 object

### Value

no value returned.

### Author(s)

Ronglai Shen shenr@mskcc.org

### References

Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.

Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236

### See Also

`tune.iCluster2`

### Examples

    #data(simu.datasets)
    #cv.fit=alist()
    #for(k in 2:5){
    #  cat(paste("K=",k,sep=""),'\n')
    #  cv.fit[[k]]=tune.iCluster2(datasets=simu.datasets, k,nrep=2, n.lambda=8)
    #}

    ##Reproducibility index (RI) plot
    #plotRI(cv.fit)

[Package iCluster version 2.1.0 Index]