R: Compute engine for haplotype EM algorithm

haplo.em.fitter {haplo.stats} | R Documentation

## Compute engine for haplotype EM algorithm

### Description

For internal use within the haplo.stats library

### Usage

    haplo.em.fitter(n.loci, n.subject, weight, geno.vec, n.alleles,
                    max.haps, max.iter, loci.insert.order, min.posterior,
                    tol, insert.batch.size, random.start, iseed1, iseed2,
                    iseed3, verbose)

### Arguments

`n.loci` | number of loci in genotype matrix
`n.subject` | number of subjects in the sample
`weight` | numeric weights
`geno.vec` | vectorized genotype matrix
`n.alleles` | numeric vector giving number of alleles at each marker
`max.haps` | maximum unique haplotypes in the sample
`max.iter` | maximum iterations to perform in the fitter
`loci.insert.order` | order to insert loci for progressive insertion
`min.posterior` | after insertion and maximization, discard haplotype pairs per person that do not meet minimum posterior prob
`tol` | convergence tolerance for E-M steps
`insert.batch.size` | number of markers to insert per batch
`random.start` |
`iseed1` | random seed for algorithm
`iseed2` | random seed for algorithm
`iseed3` | random seed for algorithm
`verbose` | logical, print long, verbose output from E-M steps?

### Details

For internal use within the haplo.stats library

[Package haplo.stats version 1.7.9 Index]