R: consistency checks for x.linked locus

x.sexcheck {haplo.stats} | R Documentation

## consistency checks for x.linked locus

### Description

Given an x.linked locus object and a vector of gender codes, the function will check to make sure the gender codes match the codes used to originally define the locus, and that no individuals defined as males are heterozygous.

### Usage

    x.sexcheck(x, sex, stop=FALSE)

### Arguments

`x` | an object of class locus
`sex` | a vector of codes identifying the gender of each individual contained in the locus object
`stop` | if T , any warnings are converted to errors and execution is halted immediately

### Value

T if one or more errors were found F if no errors were found

### See Also

`locus`

### Examples

    c1 <- c(101,10, 112,112,21,112)
    c2 <- c(101,101,112,100,21, 10)

    gender <- rep(c("M","F"),3)
    loc2 <- locus(c1,c2,chrom="X",locus.alias="DXS1234", x.linked=TRUE, sex=gender)

    loc2

[Package haplo.stats version 1.7.9 Index]