R: Simple, Ordinary or Universal, global or local, Point or...

krige {gstat} | R Documentation

## Simple, Ordinary or Universal, global or local, Point or Block Kriging, or simulation.

### Description

Function for simple, ordinary or universal kriging (sometimes called external drift kriging), kriging in a local neighbourhood, point kriging or kriging of block mean values (rectangular or irregular blocks), and conditional (Gaussian or indicator) simulation equivalents for all kriging varieties, and function for inverse distance weighted interpolation. For multivariable prediction, see gstat and predict

### Usage

    krige(formula, locations, ...)
    krige.locations(formula, locations, data, newdata, model, ..., beta, nmax
    = Inf, nmin = 0, omax = 0, maxdist = Inf, block, nsim = 0, indicators = FALSE,
    na.action = na.pass, debug.level = 1)
    krige.spatial(formula, locations, newdata, model, ..., beta, nmax
    = Inf, nmin = 0, omax = 0, maxdist = Inf, block, nsim = 0, indicators = FALSE,
    na.action = na.pass, debug.level = 1)
    krige0(formula, data, newdata, model, beta, y, ..., computeVar = FALSE,
    	fullCovariance = FALSE)
    idw(formula, locations, ...)
    idw.locations(formula, locations, data, newdata, nmax = Inf,
    	nmin = 0, omax = 0, maxdist = Inf, block, na.action = na.pass, idp = 2.0,
    	debug.level = 1)
    idw.spatial(formula, locations, newdata, nmax = Inf, nmin = 0,
        omax = 0, maxdist = Inf, block = numeric(0), na.action = na.pass, idp = 2.0,
    	debug.level = 1)
    idw0(formula, data, newdata, y, idp = 2.0)

### Arguments

`formula` | formula that defines the dependent variable as a linear model of independent variables; suppose the dependent variable has name `z`, for ordinary and simple kriging use the formula `z~1`; for simple kriging also define `beta` (see below); for universal kriging, suppose `z` is linearly dependent on `x` and `y`, use the formula `z~x+y`
`locations` | object of class `Spatial` or `sf`, or (deprecated) formula defines the spatial data locations (coordinates) such as `~x+y`
`data` | data frame: should contain the dependent variable, independent variables, and coordinates, should be missing if locations contains data.
`newdata` | object of class `Spatial`, `sf` or `stars` with prediction/simulation locations; should contain attributes with the independent variables (if present).
`model` | variogram model of dependent variable (or its residuals), defined by a call to vgm or fit.variogram; for `krige0` also a user-supplied covariance function is allowed (see example below)
`beta` | for simple kriging (and simulation based on simple kriging): vector with the trend coefficients (including intercept); if no independent variables are defined the model only contains an intercept and beta should be the simple kriging mean
`nmax` | for local kriging: the number of nearest observations that should be used for a kriging prediction or simulation, where nearest is defined in terms of the space of the spatial locations. By default, all observations are used
`nmin` | for local kriging: if the number of nearest observations within distance `maxdist` is less than `nmin`, a missing value will be generated; see maxdist
`omax` | see gstat
`maxdist` | for local kriging: only observations within a distance of `maxdist` from the prediction location are used for prediction or simulation; if combined with `nmax`, both criteria apply
`block` | block size; a vector with 1, 2 or 3 values containing the size of a rectangular in x-, y- and z-dimension respectively (0 if not set), or a data frame with 1, 2 or 3 columns, containing the points that discretize the block in the x-, y- and z-dimension to define irregular blocks relative to (0,0) or (0,0,0)—see also the details section of predict. By default, predictions or simulations refer to the support of the data values.
`nsim` | integer; if set to a non-zero value, conditional simulation is used instead of kriging interpolation. For this, sequential Gaussian or indicator simulation is used (depending on the value of `indicators`), following a single random path through the data.
`indicators` | logical, only relevant if `nsim` is non-zero; if TRUE, use indicator simulation; else use Gaussian simulation
`na.action` | function determining what should be done with missing values in 'newdata'. The default is to predict 'NA'. Missing values in coordinates and predictors are both dealt with.
`debug.level` | debug level, passed to predict; use -1 to see progress in percentage, and 0 to suppress all printed information
`...` | for krige: arguments that will be passed to gstat; for `krige0`: arguments that will be passe to `model`
`idp` | numeric; specify the inverse distance weighting power
`y` | matrix; to krige multiple fields in a single step, pass data as columns of matrix `y`. This will ignore the value of the response in `formula`.
`computeVar` | logical; if TRUE, prediction variances will be returned
`fullCovariance` | logical; if FALSE a vector with prediction variances will be returned, if TRUE the full covariance matrix of all predictions will be returned

### Details

Function `krige` is a simple wrapper method around gstat and predict for univariate kriging prediction and conditional simulation methods available in gstat. For multivariate prediction or simulation, or for other interpolation methods provided by gstat (such as inverse distance weighted interpolation or trend surface interpolation) use the functions gstat and predict directly.

Function `idw` performs just as `krige` without a model being passed, but allows direct specification of the inverse distance weighting power. Don't use with predictors in the formula.

For further details, see predict.

### Value

if `locations` is not a formula, object of the same class as `newdata` (deriving from `Spatial`); else a data frame containing the coordinates of `newdata`. Attributes columns contain prediction and prediction variance (in case of kriging) or the `abs(nsim)` columns of the conditional Gaussian or indicator simulations

`krige0` and `idw0` are alternative functions with reduced functionality and larger memory requirements; they return numeric vectors (or matrices, in case of multiple dependent) with predicted values only; in case `computeVar` is TRUE, a list with elements `pred` and `var` is returned, containing predictions, and (co)variances (depending on argument `fullCovariance`).

### Methods

formula = "formula", locations = "formula"

  locations specifies which coordinates in `data` refer to spatial coordinates

formula = "formula", locations = "Spatial"

  Object locations knows about its own spatial locations

formula = "formula", locations = "NULL"

  used in case of unconditional simulations; newdata needs to be of class Spatial

### Note

Daniel G. Krige is a South African scientist who was a mining engineer when he first used generalised least squares prediction with spatial covariances in the 50's. George Matheron coined the term `kriging` in the 60's for the action of doing this, although very similar approaches had been taken in the field of meteorology. Beside being Krige's name, I consider "krige" to be to "kriging" what "predict" is to "prediction".

### Author(s)

Edzer Pebesma

### References

N.A.C. Cressie, 1993, Statistics for Spatial Data, Wiley.

http://www.gstat.org/

Pebesma, E.J., 2004. Multivariable geostatistics in S: the gstat package. Computers \& Geosciences, 30: 683-691.

### See Also

gstat, predict

### Examples

    library(sp)
    data(meuse)
    coordinates(meuse) = ~x+y
    data(meuse.grid)
    gridded(meuse.grid) = ~x+y
    m <- vgm(.59, "Sph", 874, .04)
    # ordinary kriging:
    x <- krige(log(zinc)~1, meuse, meuse.grid, model = m)
    spplot(x["var1.pred"], main = "ordinary kriging predictions")
    spplot(x["var1.var"],  main = "ordinary kriging variance")
    # simple kriging:
    x <- krige(log(zinc)~1, meuse, meuse.grid, model = m, beta = 5.9)
    # residual variogram:
    m <- vgm(.4, "Sph", 954, .06)
    # universal block kriging:
    x <- krige(log(zinc)~x+y, meuse, meuse.grid, model = m, block = c(40,40))
    spplot(x["var1.pred"], main = "universal kriging predictions")

    # krige0, using user-defined covariance function and multiple responses in y:
    # exponential variogram with range 500, defined as covariance function:
    v = function(x, y = x) { exp(-spDists(coordinates(x),coordinates(y))/500) }
    # krige two variables in a single pass (using 1 covariance model):
    y = cbind(meuse$zinc,meuse$copper,meuse$lead,meuse$cadmium)
    x <- krige0(zinc~1, meuse, meuse.grid, v, y = y)
    meuse.grid$zinc = x[,1]
    spplot(meuse.grid["zinc"], main = "zinc")
    meuse.grid$copper = x[,2]
    spplot(meuse.grid["copper"], main = "copper")

    # the following has NOTHING to do with kriging, but --
    # return the median of the nearest 11 observations:
    x = krige(zinc~1, meuse, meuse.grid, set = list(method = "med"), nmax = 11)
    # get 25%- and 75%-percentiles of nearest 11 obs, as prediction and variance:
    x = krige(zinc~1, meuse, meuse.grid, nmax = 11,
    	set = list(method = "med", quantile = 0.25))
    # get diversity (# of different values) and mode from 11 nearest observations:
    x = krige(zinc~1, meuse, meuse.grid, nmax = 11, set = list(method = "div"))

[Package gstat version 2.0-3 Index]