| gsalib-package {gsalib} | R Documentation |
Utility functions for analysis of genome sequence data with the GATK
| Package: | gsalib |
| Type: | Package |
| Version: | 2.1 |
| Date: | 2014-12-09 |
| License: | MIT |
| LazyLoad: | yes |
This package is primarily meant to be used programmatically by GATK tools. However the gsa.read.gatkreport() function can be used to easily read in data from a GATKReport. A GATKReport is a multi-table document generated by GATK tools.
Kiran Garimella
Maintainer: Geraldine Van der Auwera <vdauwera@broadinstitute.org>
http://www.broadinstitute.org/gatk/guide/article?id=1244
test_file = system.file("inst", "extdata", "test_gatkreport.table", package = "gsalib");
report = gsa.read.gatkreport(test_file);