R: Utility functions for GATK

gsalib-package {gsalib} | R Documentation

## Utility functions for GATK

### Description

Utility functions for analysis of genome sequence data with the GATK

### Details

Package: | gsalib
Type: | Package
Version: | 2.1
Date: | 2014-12-09
License: | MIT
LazyLoad: | yes

This package is primarily meant to be used programmatically by GATK tools. However the gsa.read.gatkreport() function can be used to easily read in data from a GATKReport. A GATKReport is a multi-table document generated by GATK tools.

### Author(s)

Kiran Garimella

Maintainer: Geraldine Van der Auwera <vdauwera@broadinstitute.org>

### References

http://www.broadinstitute.org/gatk/guide/article?id=1244

### Examples

    test_file = system.file("inst", "extdata", "test_gatkreport.table", package = "gsalib");
    report = gsa.read.gatkreport(test_file);

[Package gsalib version 2.1 Index]