calc_chisq_statistic    Calculate Chi-square goodness of fit Statistic
                        for Generalized Poisson and Poisson Models.
estimate_differential_expression
                        Estimating differential expression statistics
                        for Genes between all possible pairwise
                        conditions
estimate_differential_splicing
                        Estimating differential splicing statistics for
                        an exon in a gene between all possible pairwise
                        conditions
estimate_exon_gene_expression
                        Estimating Exon and Gene Expressions using the
                        Poisson and Generalized Poisson Models and
                        calculating their goodness of fit statistic
exons                   Exon Annotation Database
generalized_poisson_likelihood
                        Maximum Likelihood Estimates for the
                        Generalized Poisson Model
genes                   Gene annotations
likelihood_ratio_generalized_poisson_exon_gene
                        Log Likelihood ratio statistic for comparison
                        of the splicing ratio of an exon in two
                        conditions
likelihood_ratio_poisson_exon_gene
                        Log Likelihood ratio statistic for comparison
                        of the splicing ratio of an exon across two
                        conditions using the Poisson Distribution
likelihood_ratio_tissue_generalized_poisson
                        Chi Square test statistic for comparison of
                        expression levels of genes/exons across two
                        conditions using the Generalized Poisson model
likelihood_ratio_tissue_poisson
                        Chi Square test statistic for comparison of
                        expression levels of genes/exons across two
                        conditions using the Poisson Model
perform_permutation_de
                        Perform a Permutation Test to fit the null
                        distribution of the test statistic to a Gamma
                        Distribution
perform_permutation_ds
                        Perform a Permutation Test to fit the null
                        distribution of the test statistic to a Gamma
                        Distribution
reads                   Mapped Reads
