R: CAGE Data: Transcription Start Site Distributions (TSSDs) by...

cage {GMD} | R Documentation

## CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags

### Description

Transcription Start Site Distributions (TSSDs) by CAGE tags.

### Usage

    cage
    cagel

### Details

`cage` is a list of 20 named TSSDs. `cagel` is a longer version of `cage`, with 50 named TSSDs.

### References

Zhao et al (2011), "Systematic Clustering of Transcription Start Site Landscapes", PLoS ONE 6(8): e23409.

http://dx.plos.org/10.1371/journal.pone.0023409

### See Also

`gmdp` and `gmdm`, with examples using `cage`. `chipseq` for histone marks by ChIP-seq reads.

### Examples

    help(cage)
    data(cage)
    class(cage)
    length(cage)
    names(cage)
    ## Not run: cage

    data(cagel)
    names(cagel)
    ## Not run: cagel

[Package GMD version 0.3.3 Index]