R: ChIP-seq data: ChIP-seq Enrichment around TSSs

chipseq {GMD} | R Documentation

## ChIP-seq data: ChIP-seq Enrichment around TSSs

### Description

The Distributions of Histone Modification Enrichment (and Others) by ChIP-seq reads that are binned, aligned and averaged around +/-5000nt of Transcription Start Sites (TSSs) of scattered-type TSSDs (see References).

### Usage

    chipseq_mES
    chipseq_hCD4T

### Details

`chipseq_mES` is a list of 6 named ChIP-seq read distributions from mouse ES cells.
`chipseq_hCD4T` is a list of 40 named ChIP-seq read distributions from human CD4+ T cells.

### References

Zhao et al (2011), "Systematic Clustering of Transcription Start Site Landscapes", PLoS ONE 6(8): e23409.

http://dx.plos.org/10.1371/journal.pone.0023409

### See Also

`gmdp` and `gmdm`, with examples using `chipseq`. `cage` for data of Transcription Start Sites (TSSs) by CAGE tags.

### Examples

    require(GMD)
    help(chipseq)
    data(chipseq_mES)
    class(chipseq_mES)
    length(chipseq_mES)
    names(chipseq_mES)
    ## Not run: chipseq_mES

    data(chipseq_hCD4T)
    names(chipseq_hCD4T)

[Package GMD version 0.3.3 Index]