R: Generalized Linear Mixed Models using Template Model Builder

# Generalized Linear Mixed Models using Template Model Builder

## Documentation for package ‘glmmTMB’ version 0.2.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

betabinomial | Family functions for glmmTMB
beta_family | Family functions for glmmTMB
compois | Family functions for glmmTMB
confint.glmmTMB | Calculate confidence intervals
confint.profile.glmmTMB | Compute likelihood profiles for a fitted model
epil2 | Seizure Counts for Epileptics - Extended
family_glmmTMB | Family functions for glmmTMB
findReTrmClasses | list of specials - taken from enum.R
fixef | Extract fixed-effects estimates
fixef.glmmTMB | Extract fixed-effects estimates
formatVC | Format the 'VarCorr' Matrix of Random Effects
genpois | Family functions for glmmTMB
getCapabilities | List model options that glmmTMB knows about
getME | Extract or Get Generalize Components from a Fitted Mixed Effects Model
getME.glmmTMB | Extract or Get Generalize Components from a Fitted Mixed Effects Model
getReStruc | Calculate random effect structure Calculates number of random effects, number of parameters, blocksize and number of blocks. Mostly for internal use.
getXReTrms | Create X and random effect terms from formula
glmmTMB | Fit models with TMB
glmmTMBControl | Control parameters for glmmTMB optimization
nbinom1 | Family functions for glmmTMB
nbinom2 | Family functions for glmmTMB
numFactor | Factor with numeric interpretable levels.
OwlModel | Begging by Owl Nestlings
OwlModel_nb1_bs | Begging by Owl Nestlings
OwlModel_nb1_bs_mcmc | Begging by Owl Nestlings
Owls | Begging by Owl Nestlings
parseNumLevels | Factor with numeric interpretable levels.
predict.glmmTMB | prediction
print.VarCorr.glmmTMB | Printing The Variance and Correlation Parameters of a 'glmmTMB'
profile.glmmTMB | Compute likelihood profiles for a fitted model
ranef | Extract Random Effects
ranef.glmmTMB | Extract Random Effects
residuals.glmmTMB | Compute residuals for a glmmTMB object
Salamanders | Repeated counts of salamanders in streams
sigma | Extract residual standard deviation or dispersion parameter
sigma.glmmTMB | Extract residual standard deviation or dispersion parameter
simulate.glmmTMB | Simulate from a glmmTMB fitted model
tmbroot | Compute likelihood profile confidence intervals of a TMB object by root-finding (generalized from TMB::tmbprofile)
truncated_compois | Family functions for glmmTMB
truncated_genpois | Family functions for glmmTMB
truncated_nbinom1 | Family functions for glmmTMB
truncated_nbinom2 | Family functions for glmmTMB
truncated_poisson | Family functions for glmmTMB
tweedie | Family functions for glmmTMB
vcov.glmmTMB | Calculate Variance-Covariance Matrix for a Fitted glmmTMB model