stat_wl_summary {ggspectra}R Documentation

Average area under curve for regions.

Description

stat_wl_summary computes the area under a curve.

Usage

stat_wl_summary(mapping = NULL, data = NULL, geom = "text",
  range = NULL, integral.fun = integrate_xy, label.fmt = "%.3g",
  position = "identity", na.rm = FALSE, show.legend = NA,
  inherit.aes = TRUE, ...)

Arguments

mapping

The aesthetic mapping, usually constructed with aes or aes_. Only needs to be set at the layer level if you are overriding the plot defaults.

data

A layer specific dataset - only needed if you want to override the plot defaults.

geom

The geometric object to use display the data

range

a numeric vector of at least length two.

integral.fun

function on $x$ and $y$.

label.fmt

character string giving a format definition for converting y-integral values into character strings by means of function sprintf.

position

The position adjustment to use for overlapping points on this layer

na.rm

a logical value indicating whether NA values should be stripped before the computation proceeds.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders.

...

other arguments passed on to layer. This can include aesthetics whose values you want to set, not map. See layer for more details.

Value

A data frame with one row.

Computed variables

What it is named integral below is the result of appying integral.fun, with default integrate_xy.

y.label

y formatted according to label.fmt

x

w.band-midpoint

xmin

range minimum

xmax

range maximum

y

data$y integral for the range by the spread of the range

Default aesthetics

Set by the statistic and available to geoms.

label

..label..

x

..x..

xmin

..xmin..

xmax

..xmax..

y

..y..

ymin

0

ymax

..y..

yintercept

..y..

Required aesthetics

Required by the statistic and need to be set with aes().

x

numeric, wavelength in nanometres

y

numeric, a spectral quantity

See Also

Other stats functions: stat_color, stat_label_peaks, stat_peaks, stat_wb_box, stat_wb_column, stat_wb_contribution, stat_wb_hbar, stat_wb_irrad, stat_wb_label, stat_wb_mean, stat_wb_relative, stat_wb_sirrad, stat_wb_total, stat_wl_strip

Examples

library(photobiology)
library(ggplot2)
# ggplot() methods for spectral objects set a default mapping for x and y.
ggplot(sun.spct) + geom_line() +
  stat_wl_summary(geom = "hline")
ggplot(sun.spct) + geom_line() +
  stat_wl_summary(label.fmt = "mean = %.3f", color = "red", vjust = -0.3) +
  stat_wl_summary(geom = "hline", color = "red")
[Package ggspectra version 0.2.3 Index]