| cps_plot {ggspectra} | R Documentation |
This function returns a ggplot object with an annotated plot of a cps_spct object.
cps_plot(spct, w.band, range, pc.out, label.qty, span, annotations, norm, text.size, na.rm, ...)
spct |
a cps_spct object |
w.band |
list of waveband objects |
range |
an R object on which range() returns a vector of length 2, with min annd max wavelengths (nm) |
pc.out |
logical, if TRUE use percents instead of fraction of one |
label.qty |
character string giving the type of summary quantity to use for labels, one of "mean", "total", "contribution", and "relative". |
span |
a peak is defined as an element in a sequence which is greater than all other elements within a window of width span centered at that element. |
annotations |
a character vector |
norm |
numeric normalization wavelength (nm) or character string "max" for normalization at the wavelength of highest peak. |
text.size |
numeric size of text in the plot decorations. |
na.rm |
logical. |
... |
other arguments |
a ggplot object.
Note that scales are expanded so as to make space for the annotations. The object returned is a ggplot object, and can be further manipulated. When spct has more than one column with spectral data, each of these columns is normalized individually.