R: Gene Citation Index

gene_citation {ggpubr} | R Documentation

## Gene Citation Index

### Description

Contains the mean citation index of 66 genes obtained by assessing PubMed abstracts and annotations using two key words i) Gene name + b cell differentiation and ii) Gene name + plasma cell differentiation.

### Usage

    data("gene_citation")

### Format

A data frame with 66 rows and 2 columns.

`gene`

  gene names

`citation_index`

  mean citation index

### Examples

    data(gene_citation)

    # Some key genes of interest to be highlighted
    key.gns <- c("MYC", "PRDM1", "CD69", "IRF4", "CASP3", "BCL2L1", "MYB",  "BACH2", "BIM1",  "PTEN",
                "KRAS", "FOXP1", "IGF1R", "KLF4", "CDK6", "CCND2", "IGF1", "TNFAIP3", "SMAD3", "SMAD7",
                "BMPR2", "RB1", "IGF2R", "ARNT")
    # Density distribution
    ggdensity(gene_citation, x = "citation_index", y = "..count..",
      xlab = "Number of citation",
      ylab = "Number of genes",
      fill = "lightgray", color = "black",
      label = "gene", label.select = key.gns, repel = TRUE,
      font.label = list(color= "citation_index"),
      xticks.by = 20, # Break x ticks by 20
      gradient.cols = c("blue", "red"),
      legend = "bottom",
      legend.title = ""                                     # Hide legend title
      )

[Package ggpubr version 0.1.6 Index]