R: Average kinship confidence interval

gen.phiCI {GENLIB} | R Documentation

## Average kinship confidence interval

### Description

Returns the confidence interval of the average kinship among pairs of specified individuals

### Usage

    gen.phiCI(phiMatrix, prob=c(0.025,0.05,0.95,0.975), b=5000, print.it=FALSE)

### Arguments

`phiMatrix` | A square matrix of kinship coefficients obtained for example with gen.phi, or an array of square matrices (GLmultiMatrix object) of kinship coefficients obtained with gen.phi. Required.
`prob` | Confidence limits probabilities. Default is probs=c(0.025, 0.05, 0.95, 0.975).
`b` | Number of simulations used to calculate the confidence interval. Default is b="5000".
`print.it` | If print.it=FALSE (default), progression in the number of simulations performed is not displayed.

### Value

A vector or a GLmultiVector object depending on the type of 'phiMatrix' entered. If 'phiMatrix' is a GLmultiMatrix, an array of vectors (GLmultiVector), one for each depth, is returned. Array of size ('depthMax'-'depthMin'), vectors of size 'length(probs)'. If 'phiMatrix' is a matrix, a vector of size 'length(probs)' is returned.

### See Also

`gen.genealogy` `gen.phi` `gen.phiOver` `gen.phiMean`

### Examples

    data(genea140)
    gen140<-gen.genealogy(genea140)
    ge07<-gen.branching(gen140, pro=gen.pro(gen140)[c(1:7)])
    phiMat<-gen.phi(ge07)
    gen.phiCI(phiMat)

[Package GENLIB version 1.1.5 Index]