R: Function to generate descriptive summary tables for genotypic...

descriptives.marker {GenABEL} | R Documentation

## Function to generate descriptive summary tables for genotypic data

### Description

Function to generate descriptive summary tables for genotypic data

### Usage

    	descriptives.marker(data,snpsubset,idsubset,file,mafc,hwec,snpc,idcc,digits = 3)

### Arguments

`data` | an object of `snp.data-class` or `gwaa.data-class`
`snpsubset` | Index, character or logical vector with subset of SNPs to run analysis on. If missing, all SNPs from `data` are used for analysis.
`idsubset` | Index, character or logical vector with subset of IDs to run analysis on. If missing, all people from `data` are used for analysis.
`file` | A string specifying the name of a file to write the tables to (default is missing).
`mafc` | vector containing desired cut-off levels for minor allele frequency
`hwec` | vector containing desired cut-off levels for exact HWE P-values
`snpc` | vector containing desired cut-off levels for SNP call rate
`idcc` | vector containing desired cut-off levels for individual SNP call rate
`digits` | number of digits to be printed

### Value

A list containing descriptive tables and statistics

### Author(s)

Yurii Aulchenko

### Examples

    	require(GenABEL.data)
    	data(srdta)
    	descriptives.marker(srdta)

[Package GenABEL version 1.8-0 Index]