R: Function to generate descriptive summary tables for genotypic...

descriptives.marker {GenABEL}

R Documentation

Function to generate descriptive summary tables for genotypic data

Function to generate descriptive summary tables for genotypic data

	descriptives.marker(data,snpsubset,idsubset,file,mafc,hwec,snpc,idcc,digits = 3)

`data`	an object of `snp.data-class` or `gwaa.data-class`
`snpsubset`	Index, character or logical vector with subset of SNPs to run analysis on. If missing, all SNPs from `data` are used for analysis.
`idsubset`	Index, character or logical vector with subset of IDs to run analysis on. If missing, all people from `data` are used for analysis.
`file`	A string specifying the name of a file to write the tables to (default is missing).
`mafc`	vector containing desired cut-off levels for minor allele frequency
`hwec`	vector containing desired cut-off levels for exact HWE P-values
`snpc`	vector containing desired cut-off levels for SNP call rate
`idcc`	vector containing desired cut-off levels for individual SNP call rate
`digits`	number of digits to be printed

A list containing descriptive tables and statistics

Yurii Aulchenko

	require(GenABEL.data)
	data(srdta)
	descriptives.marker(srdta)

[Package GenABEL version 1.8-0 Index]