R: Calculate dose estimates for a fitted dose-response model...

Target Doses {DoseFinding} | R Documentation

## Calculate dose estimates for a fitted dose-response model (via `fitMod` or `bFitMod`) or a `Mods` object.

### Description

The TD (target dose) is defined as the dose that achieves a target effect of Delta over placebo (if there are multiple such doses, the smallest is chosen):

TD = min {x|f(x) > f(0)+Delta}

If a decreasing trend is beneficial the definition of the TD is

TD = min {x|f(x) < f(0)-Delta}

When Delta is the clinical relevance threshold, then the TD is similar to the usual definition of the minimum effective dose (MED).

The ED (effective dose) is defined as the dose that achieves a certain percentage p of the full effect size (within the observed dose-range!) over placebo (if there are multiple such doses, the smallest is chosen).

EDp=min {x|f(x) > f(0) + p(f(dmax)-f(0))}

Note that this definition of the EDp is different from traditional definition based on the Emax model, where the EDp is defined relative to the asymptotic maximum effect (rather than the maximum effect in the observed dose-range).

### Usage

    TD(object, Delta, TDtype = c("continuous", "discrete"),
       direction = c("increasing", "decreasing"), doses)

    ED(object, p, EDtype = c("continuous", "discrete"), doses)

### Arguments

`object` | An object of class c(Mods, fullMod), DRMod or bFitMod
`Delta, p` | Delta: The target effect size use for the target dose (TD) (Delta should be > 0). p: The percentage of the dose to use for the effective dose.
`TDtype, EDtype` | character that determines, whether the dose should be treated as a continuous variable when calculating the TD/ED or whether the TD/ED should be calculated based on a grid of doses specified in doses
`direction` | Direction to be used in defining the TD. This depends on whether an increasing or decreasing of the response variable is beneficial.
`doses` | Dose levels to be used, this needs to include placebo, TDtype or EDtype are equal to "discrete".

### Value

Returns the dose estimate

### Author(s)

Bjoern Bornkamp

### See Also

`Mods`, `fitMod`, `bFitMod`, `drmodels`

### Examples

    ## example for creating a "full-model" candidate set placebo response
    ## and maxEff already fixed in Mods call
    doses <- c(0, 10, 25, 50, 100, 150)
    fmodels <- Mods(linear = NULL, emax = 25,
                       logistic = c(50, 10.88111), exponential = 85,
                       betaMod = rbind(c(0.33, 2.31), c(1.39, 1.39)),
                       linInt = rbind(c(0, 1, 1, 1, 1),
                                      c(0, 0, 1, 1, 0.8)),
                       doses=doses, placEff = 0, maxEff = 0.4,
                       addArgs=list(scal=200))

    ## calculate doses giving an improvement of 0.3 over placebo
    TD(fmodels, Delta=0.3)
    ## discrete version
    TD(fmodels, Delta=0.3, TDtype = "discrete", doses=doses)
    ## doses giving 50% of the maximum effect
    ED(fmodels, p=0.5)
    ED(fmodels, p=0.5, EDtype = "discrete", doses=doses)

    plot(fmodels, plotTD = TRUE, Delta = 0.3)

[Package DoseFinding version 0.9-17 Index]